Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq72 223 4e-53 seq272 86.0 8e-12 >seq72 Length=1307737 Score = 223 bits (246), Expect = 4e-53 Identities = 944/1469 (64%), Gaps = 49/1469 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||||| |||||| || || ||||||||||| || || ||||| || | ||| Sbjct 1153617 GTAGATGTTTGATGTGTAGGGCTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACT 1153558 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| || |||| | |||||||| || | ||| | ||||||||| | || Sbjct 1153557 GGCGGTAGGCATAGGGGCCACGAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTGCTC 1153498 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 || ||||| || | | | || || | || |||| ||||||| |||||| Sbjct 1153497 TCGAAGGGTCTCCCACTCCCAAAGGTCAGAGGGGGTG-ACATTCC-ACATGTCGAACTGA 1153440 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | || || || || |||| ||||| | |||| |||||| | | || Sbjct 1153439 AGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCG 1153380 Query 110945 AATTCACAGCTCGCCTCC---AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 | ||| || | | ||| |||| || || || || || || ||||| | || Sbjct 1153379 AGTTC-CA--TGGACTCAGTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTGTTT 1153323 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCG 111056 | || || ||| || || || ||||||| | || || | |||| | Sbjct 1153322 AGCTGACGAGCCTCAGGCGACTCGAAAGGCATGCGTAGAGCCAAGAA-----TGCATCTG 1153268 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||| |||||||| | |||||| |||| || ||||| || || || || || Sbjct 1153267 CAAGACCCTGAACACCAAGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCT 1153208 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 |||||| || | || || |||| ||||| || || | || | ||| | Sbjct 1153207 GAACGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAA 1153148 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 ||| || || || | | | | | || || | || || || || || | Sbjct 1153147 CTTCGTGGAGCTTCTTAAAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAG 1153088 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | | || |||| ||||||||||| |||||| | | ||| || | ||| || | Sbjct 1153087 CCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAG 1153028 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || | ||||| || || || |||| ||||| ||||| ||||| |||||| | Sbjct 1153027 TGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAG 1152968 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||||| |||||| |||| | || ||||| || || | || |||||| | | || Sbjct 1152967 CATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACC 1152908 Query 111417 AAA-CATCGG----CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 111471 | | | || | ||| | || | | | | || |||||| ||| ||||| Sbjct 1152907 ACAGCTTCTGGGCACGGATCGTCTGACGAC-----CACGACCCTCCTTCTCATACTTCTC 1152853 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| ||||| ||||||||||| || ||| | || || || || || || || Sbjct 1152852 GTAAAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCA 1152793 Query 111532 GAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | |||| ||| || | |||| ||||| ||||||||||| || || || ||||| | Sbjct 1152792 CATGAGAGTCCAGTTCTCGTTCTTC-TCAACGCGCTTCATGAAGAGATCAGGGATCCATA 1152734 Query 111591 GGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 | | | || || |||| | ||| || | ||||| | || || || ||| | || Sbjct 1152733 GAGCTAGGAACAGGTCTCGTGCACGGATC-TCTTCCTTTCCGTGATTCTTTCGAAGATCC 1152675 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTT 111705 |||||||| | || ||| | |||||| ||||| ||||||| || | | || | Sbjct 1152674 AGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGC 1152615 Query 111706 TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | | ||| | | |||| ||||| | || ||| ||| || || || ||||| || || Sbjct 1152614 TTGTTGCC-ACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGAT 1152556 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCA 111823 || |||| ||| || || || || ||| ||||| | | || | | Sbjct 1152555 GATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTG--TAGCACGAATGCGG 1152498 Query 111824 TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTT 111883 || | || | || ||||| || ||| ||||||||| ||||| | | ||||| Sbjct 1152497 TGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTA 1152438 Query 111884 CCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGC 111943 | |||||||||| || ||| ||||| | ||| ||||||||| || | ||| Sbjct 1152437 TCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGA 1152378 Query 111944 GGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 112002 | || ||||| ||||||||||| || || | || ||| | || | || | | ||| Sbjct 1152377 GCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAGA-ACTTGTTGGA 1152319 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 ||| | || ||| ||||| | |||| ||||||| || || ||| || | || || Sbjct 1152318 CATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAGATACCCACAGCAAC 1152259 Query 112063 CCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAG 112120 ||||||| ||||| ||||||| || | | |||| | |||| |||| |||||| Sbjct 1152258 ACGCATGATCATGTGCTGTGGGCGCTCAACAATCTTGCCGTTGAGC--TTGAGGAGATAG 1152201 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || || |||| ||| ||||| Sbjct 1152200 GAACGCTCCAGTGTCTTGAAACCGAAGTA 1152172 >seq272 Length=795643 Score = 86.0 bits (94), Expect = 8e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || ||||| || || || || |||||| ||||| ||||| ||||| Sbjct 63279 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 63220 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | ||| | ||| ||||||||| ||||| || Sbjct 63219 ACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAGATGCCCTCAACGGC 63160 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| ||| || | ||||| | | ||| | | || ||| ||||| Sbjct 63159 AGCGAAGGCAACAAGACGCTGAGCGAATGTGGATTTCTTGTCCTGAATCCAGCGAATTGC 63100 Query 122850 CCATTTCGCCTTCTT 122864 ||| | |||||||| Sbjct 63099 CCACTCGGCCTTCTT 63085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028271060000