Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq72 172 7e-38 seq272 113 6e-20 seq71 89.7 6e-13 >seq72 Length=1307737 Score = 172 bits (190), Expect = 7e-38 Identities = 1086/1724 (63%), Gaps = 53/1724 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || ||| |||| | || || |||||||| || ||||| |||| Sbjct 1153993 TGAACTGAATAGGGGCCGCAGCAGCCTGAGTACGAAGATAGTACATGCCAGTCTTAAGCC 1153934 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || | |||||| || | ||||| || | |||| | | ||| | ||| Sbjct 1153933 CCAGTTTCCAGCCAGCAAAGTGCATACTGGTAATCTTGCCCATTGAGGGATCCTTCATAT 1153874 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | | ||| ||||| || ||||| || ||||| || ||||| | || Sbjct 1153873 GGATGTTGAGAGATTGAGATTGGTCAATGAAAGCACCTCGATCGGCGGCCATCTG---CA 1153817 Query 117985 CATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || | || | |||| | ||||| || ||| ||||||| ||| | ||||| ||| Sbjct 1153816 CAAC-TTGACGTTGAGAAATCTCCCAGACGGTCTTGTAGAGAGCCTTGAGGTCATCAGGG 1153758 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCC 118097 || | || |||||||| || ||| || | |||| | | |||||| | Sbjct 1153757 ATGTTGGGAATGTTTTGGATCGA---ACCTTGCTCAGCAATGATTCGGTTCTTCATGGCA 1153701 Query 118098 TTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAAC 118157 | ||||| | || | || ||||| | || ||| ||||| || ||| Sbjct 1153700 TCGGACCACAAGCCCAACTCAACAAGATCTTTCAAGAGCCAGGGGTTGACGACCTGGAAC 1153641 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 || || || || |||| ||||| || | ||||| ||||| ||||| |||||| Sbjct 1153640 TCTCCAGCCAGAACACGTCGGGAGTAGATGTTTGATGTGTAGGGCTCGAAGCATTCATTG 1153581 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277 || || ||||| || | || ||| || ||||| || |||| ||| || ||||| ||| Sbjct 1153580 TTGCCTAAGATCTGAGAGGTACTGGCGGTAGGCATAGGGGCCACGAGCAGACTGTTGCGG 1153521 Query 118278 AGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCT 118335 | ||| | ||| | || | || || | ||||| || | | | || | Sbjct 1153520 ATACCGTGCTCCTTGATCTGCTCTCGAAGGGTCTCCCACTCCCAAAGGTCAGAGGGGGTG 1153461 Query 118336 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 118395 | | |||||| || ||||| ||||| || | || ||||| ||||||| || |||| Sbjct 1153460 ACA--TTCCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCT 1153403 Query 118396 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 118455 || || || | ||| ||| | ||| | | | ||||| || || || || | Sbjct 1153402 GGTAGGGACCTTGCTCCTTCGCGAGTTCCATGGACTCAGTAAGGGCGGCATGGTAGATAG 1153343 Query 118456 TTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATC-AAACGC--GAGTCGG 118511 | || || || | || | || | | |||| || || ||| || | || | Sbjct 1153342 TCTCGAAGATCTGCTTGTTTAGCTGACGAG-CCTCAGGCGACTCGAAAGGCATGCGTAGA 1153284 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 ||| | || |||| || ||||| || ||||| || ||||| || ||||| | ||| Sbjct 1153283 GCCAAGA---ATGCATCTGCAAGACCCTGAACACCAAGACCAATGGGTCGATGACGCATG 1153227 Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 || || || || || ||||| || | || |||||| | | || || || Sbjct 1153226 TTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTA 1153167 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 || |||| ||| | ||| || ||||| | | | | | || || | | Sbjct 1153166 CGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTAAAGTTGTAGCAGCCCTCGTCGTAA 1153107 Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | || || || || || | || ||||| || || |||| |||||| | | Sbjct 1153106 TCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCG 1153047 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 ||| || ||||| || ||||| | || || || || || |||| |||||| || Sbjct 1153046 CAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGG 1152987 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| || |||||||||||||||||| | || | || ||||| |||||| Sbjct 1152986 TTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGG 1152927 Query 118872 GACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGG-----CTCGCC 118926 | | |||||| | | ||| || | | | ||||| | ||| | | || | Sbjct 1152926 GCTTCGAGAATCGAGTACCA--CAGCTTCTG--GGCACGGAT-CGTCTGACGACCACGAC 1152872 Query 118927 CCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 118986 |||| | ||| ||||| ||| ||||| |||||||| || || | || | || | Sbjct 1152871 CCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGC 1152812 Query 118987 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 119046 | || || | ||||| | ||||| ||| | | || |||||| |||||||||| Sbjct 1152811 CAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGA 1152752 Query 119047 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCC 119105 |||| || |||||||| || || ||| || || || || || || |||| | || Sbjct 1152751 AGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTCGTGCACGGATCT-CTTCCTTTCCG 1152693 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 ||||| || | |||| || || | || ||| | |||||| || || || || | Sbjct 1152692 TGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 1152633 Query 119166 GCGATTGACCCCTTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 || | | || | | || ||| |||| | ||||| || |||||| ||| Sbjct 1152632 GCAAAGGCACC---AGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTG 1152576 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAG 119277 || || || ||||| || ||||| |||| |||| ||| || || || ||| ||||| Sbjct 1152575 AACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTTCCGGCAATGTACGAG 1152516 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 || | || | | ||| | || | ||| ||||| |||||| ||||||||| Sbjct 1152515 CCTG--TAGCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCA 1152458 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | ||||| | ||||||| || || || |||| |||| | ||| | Sbjct 1152457 TGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAA 1152398 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGT 119457 ||||||| || | |||| | ||| ||||| || ||||||||||| || | || | Sbjct 1152397 GGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCAT 1152338 Query 119458 GGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGAC 119500 | | || | || | | |||||| | || ||||||||| | ||| Sbjct 1152337 GAGTAAAGA-ACTTGTTGGACATGTAGTTGTAGGTCTCGATGAC 1152295 >seq272 Length=795643 Score = 113 bits (124), Expect = 6e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| |||||||||||||||||||| || || || |||||| ||||| ||||| ||||| Sbjct 63279 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 63220 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| || | | || | || ||||||||| ||||| || Sbjct 63219 ACGCTTCTTCAACCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAGATGCCCTCAACGGC 63160 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| |||| ||||||| ||| || Sbjct 63159 AGCGAAGGCAACAAGACGCTGAGCGAA 63133 >seq71 Length=1030578 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/293 (67%), Gaps = 18/293 (6%) Strand=Plus/Minus Query 179776 AGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAG 179835 |||||||| || || ||||||| |||| ||| ||||| ||||| | ||||||| Sbjct 878137 AGACCCTTGATATGACTTCCATCGTGATCCTGATCAGTCATGATCATCAAGTGACCATAC 878078 Query 179836 CGAAGCTCGGAAACATCTTGATAATCCTTAC---CTTGTTGA------AGACCCAAGATC 179886 |||||| ||||| || ||| || |||||| | || |||| || Sbjct 878077 CGAAGCG--------TCTTGGTA-TCCGTATAGACTTGTTTATGCTTCAGTCCCAGGAAT 878027 Query 179887 TTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGGACA 179946 | ||||| || | || |||||||| |||| || | || |||||||| || || Sbjct 878026 TGCTTGATATTCTGGATTTCTTGGTTCTTGGTGATCTGATCAACGGAAGCATCGCGAACG 877967 Query 179947 TTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGA 180006 || ||| ||||||||||||||||| ||| |||| || ||| | || || Sbjct 877966 TTGAGCAGCTTTCCACGGAGAGGGAACACGCCGATTCGATCGGGATCAAGGATAGCTCGA 877907 Query 180007 CCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 180059 ||||| ||||| | ||| || || ||||| ||||||| |||||||| || Sbjct 877906 CCAGCTACTGCCAAACCCTTGGCAGAGTCACCTTCCGTCAGAATGAGCGTGCA 877854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431528041000