Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq72 282 5e-71 seq132 122 1e-22 seq272 98.7 1e-15 >seq72 Length=1307737 Score = 282 bits (312), Expect = 5e-71 Identities = 919/1406 (65%), Gaps = 55/1406 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| ||||||| || || | ||||| || || ||||||| ||| Sbjct 1152237 CCCACAGCACATGATCATGCGTGTTGCTGTGGGTATCTGGGGTGATAACATTGAACGTGT 1152296 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||||| | | || | || | ||| || | || || |||| Sbjct 1152297 CATCGAGACCTACAACTACATGTCCAACAAGT-TCTTTACTCATGCTTCTCCCACTCTCT 1152355 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||| ||||| || | || | || ||||||||| ||| | ||||| | Sbjct 1152356 TCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATG 1152415 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || |||||||||| | ||||| | | ||||| ||||||||| ||| | Sbjct 1152416 ACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAG 1152475 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGAC 104517 | ||||| || | || | || | | || | | |||||| || || || Sbjct 1152476 GAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTAC--AGGCTCGTACATTGCCGGAAC 1152533 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| |||| || || || ||||| || || || ||| ||| || | || Sbjct 1152534 CAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCAGATA 1152593 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | ||| | | | | || | | || ||||||| ||||| |||| Sbjct 1152594 TGTTGATCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAGCCCTGGC 1152652 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || | ||| || | |||||||| || | || || || || | || ||| || | Sbjct 1152653 ACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAGATCCG-T 1152711 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || ||| ||||| ||||| || ||||||||||||||| | |||||| || Sbjct 1152712 GCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAAG 1152771 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | || ||| ||||| | || || || || ||||| || | || | || Sbjct 1152772 AACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGC 1152831 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTG-CGA-C 104868 ||||||||||| ||||||||| ||||| ||| | || |||| || || | | ||| | Sbjct 1152832 GAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTCGTCAGACGATC 1152891 Query 104869 GGTG-CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 ||| |||| || ||||| | | |||||| | | |||||||||||||||| | Sbjct 1152892 CGTGCCCAGAAGC-----TGTGGTACTCGATTCTCGAAGCCCAAACCGAGACTGGTAACC 1152946 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| || || || |||| ||||| || || ||||| ||||| | Sbjct 1152947 CCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTA 1153006 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || |||||||| || || || || | |||| | |||||| |||| Sbjct 1153007 TCCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTG 1153066 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATT 105105 | || ||||| || || | ||||| ||| || || ||| ||| | | | | Sbjct 1153067 TTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGAT--TACGACGAGGGCTGCTA 1153124 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 | | | | || |||||||||||||| | || ||||| ||| | | || Sbjct 1153125 CAACTTTAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCGTAACCTGAACCGTATCAT 1153184 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| || | ||||||||| || || || || || ||| | || || || || Sbjct 1153185 CGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAACATGCGTCATCGACCCAT 1153244 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTT 105280 |||||| |||||||||||||| || |||| |||| ||| | | ||||| || Sbjct 1153245 TGGTCTTGGTGTTCAGGGTCTTGCAGATGCATTC-----TTGGCTCTACGCATGCCTTTC 1153299 Query 105281 GATTCCGACGAAGC---GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337 || || || || || || ||| || || || ||||| || || || ||| Sbjct 1153300 GAGTCGCCTGAGGCTCGTCAGCTAAACAA---GCAGATCTTCGAGACTATCTACCATGCC 1153356 Query 105338 GCTCTTGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 105395 || ||| |||| || || | || ||| | ||||| || | ||||| ||| Sbjct 1153357 GCCCTT--ACTGAGTCCATGGAACTCGCGAAGGAGCAAGGTCCCTACCAGACCTTCAAGG 1153414 Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC----AAG 105451 | || ||||||||| | || | ||||| || || |||| |||| || | || | Sbjct 1153415 GATCCCCAGCTTCAGAGGGAATCCTTCAGTTCGACATGT-GGAATGTCACCCCCTCTGAC 1153473 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 ||| | || ||||| | || || | ||||||||| | ||| | || |||||| Sbjct 1153474 CTT---TGGGAGTGGGAGACCCTTCGAGAGCAGATCAAGGAGCACGGTATCCGCAACAGT 1153530 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || ||| |||| || ||||| || ||| ||| | || ||||| || || ||||||||| Sbjct 1153531 CTGCTCGTGGCCCCTATGCCTACCGCCAGTACCTCTCAGATCTTAGGCAACAATGAATGC 1153590 Query 105572 TTTGAACCCTACACGACGAACATCTA 105597 || || |||||||| | |||||||| Sbjct 1153591 TTCGAGCCCTACACATCAAACATCTA 1153616 >seq132 Length=1352002 Score = 122 bits (134), Expect = 1e-22 Identities = 316/476 (66%), Gaps = 18/476 (4%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| ||||||||||| | ||||| | || | || ||| | || || || |||| Sbjct 702896 TCAAAACGACCTGGACGCATCAGCGCCTTGTCCAAGACGTCAGCACGGTTGGTACCGGCT 702837 Query 9587 ATGACAACAATACCTGTTTC--ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | || |||| |||| | | | ||| ||||||||||| ||||| | || ||||| | Sbjct 702836 AGAACCACAA--CCTGCTCCCGAGTATTGAAACCATCCATTTCTGTGAGAATCTGGTTGA 702779 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT------TC 9698 || ||| ||||||||||| || | ||||| | |||| || | || Sbjct 702778 GTGTAGCTTCTCGTTCATCATTGCCTCCGAAACCACGACCACTCTCCTGTCTCGCGCGTC 702719 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 | | |||||| || || |||||||||| ||||| || || | | | | | | Sbjct 702718 CAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCGA 702659 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGC 9816 |||| || |||||||| | || |||||||||||||| || ||||| | | | || Sbjct 702658 AGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATTCGGAACCGC 702599 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 || | || |||||| || || || || ||| | || ||| ||||||||||| Sbjct 702598 TGACGCT--GAAGAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAGTCTT 702541 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTCCA 9934 ||| || || || || || |||| |||||| || ||||||||||| || |||| Sbjct 702540 ACCGGTTCCAGGAGGCCCAGCCAGGATGGCACCACGAGGAATCTTGGCACCTAGCTTC-- 702483 Query 9935 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | || |||| || ||||| || ||| ||| | ||| | |||| | ||||| Sbjct 702482 TCGAATTTCTCTGGCTGCTTGAGGAAACTCACGAATTCCATGATTTCAACCTTGGC 702427 >seq272 Length=795643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 |||||||| ||||||||| ||| | ||| | || | ||| | |||||||| ||| Sbjct 63163 GTTGAGGGCATCTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGGTTGAAGAAGCGTGGT 63222 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 63223 CTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCAC 63279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257336889000