Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq273 176 1e-38 seq200 176 1e-38 seq102 87.8 5e-12 >seq273 Length=2741725 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || ||||| || ||||| || || || || || ||||| | || || || ||| Sbjct 1840862 AGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTACGGCCGTCT 1840921 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || |||||||| ||||| ||||| ||||| ||||||||||| || || |||||| Sbjct 1840922 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCC 1840981 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || ||||| ||||||| || |||| ||| ||||| ||||| | ||| Sbjct 1840982 TGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGACTTCCAGTGTGATAGTC 1841041 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| || || ||||||||||| Sbjct 1841042 TTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || || || || || ||||| || || || || | Sbjct 1841353 TTTGCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 1841412 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| || || || || || || | Sbjct 1841413 AGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGT 1841472 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| ||||| || || |||||||| || | || ||||| || || | |||||| | Sbjct 1841473 CAGGAGGGATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAG 1841532 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 1841533 ACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 1841071 CATACCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1841130 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||||||||| || || || || || || Sbjct 1841131 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGG 1841190 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || || || || || | ||||| | ||| Sbjct 1841191 AGGGATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTC 1841250 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| ||||| || || || || Sbjct 1841251 GACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGAC 1841289 >seq200 Length=1806557 Score = 176 bits (194), Expect = 1e-38 Identities = 548/842 (65%), Gaps = 15/842 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| ||||| || |||||| |||| || || || | ||| || || || || Sbjct 315679 GATATCATTGCCAATGACCAGGGTAACCGAACCACCCCTTCTTTCGTGGCCTTCACAGAC 315738 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | || |||||| | || || || |||| || || || | || || Sbjct 315739 ACCGAGCGTCTTATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCACAACACA 315798 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA----CAAT 349436 || || || || ||||| || || || | ||||| ||| || | || Sbjct 315799 GTCTTCGACGCCAAGCGTCTGATCGGCCGCAAGTTC-----ACAGATGCTGAGGTCCAGG 315853 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 | || | || || || || || | | | || | ||| |||| ||| || | | | Sbjct 315854 CCGACATGAAGCACTTCCCCTTCAA-GATCATCGAGAAG--GGTGGTAAGCCCGTCGTCG 315910 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTT 349556 |||| || | || || || || || || ||||| || || || || ||| | Sbjct 315911 AGGTCGAGTTCAAGGGAGAGACCAAGCAGTTCACTCCCGAGGAGATCTCCTCGATGATCC 315970 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || ||| || | || || || || | |||| || || | | ||||| Sbjct 315971 TCACCAAGATGCGTGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCAACAACGCTGTCG 316030 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || ||||| || || || |||||||| || || || || || || || Sbjct 316031 TGACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGTCTCA 316090 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 |||| || | || || || | || || || || || || || || || ||||| || | Sbjct 316091 TTGCCGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATTGCCTACG 316150 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | || || || | || ||| || || | || || || ||| | |||||||||| Sbjct 316151 GTCTCGACAAGAAGATTGAGGGCGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTA 316210 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 | || ||||| || || || || | || ||||| || || || || || | ||||||| Sbjct 316211 CCTTCGATGTCTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTG 316270 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAG 349916 |||| ||||||||||| |||||||| ||||| || || || || || || ||||| | Sbjct 316271 GTGACACACATCTTGGAGGAGAAGACTTTGACAACCGCCTGGTCAACCACTTCGTTAACG 316330 Query 349917 AATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 |||| ||||| |||| || | ||| | | || || | || |||| || || Sbjct 316331 AATTCAAGCG-CAAGAACAAGAAGGATCTGGCTACCAACTCTCGTGCTCTGCGCCGTCTT 316389 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 | ||||| || || ||||| |||||| || | || ||| | |||| ||||| ||||| Sbjct 316390 CGTACTGCTTGCGAGCGTGCCAAGCGTACCCTCTCCTCTTCCGCCCAGACCTCCATTGAG 316449 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 || || ||||| || || | || |||| | || || || |||||||| || ||| Sbjct 316450 ATCGACTCTCTGTTCGAGGGTATCGACTTCTACACCTCCATCACTCGTGCTCGTTTCGAA 316509 Query 350096 GA 350097 || Sbjct 316510 GA 316511 >seq102 Length=1283250 Score = 87.8 bits (96), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290 |||||||||||| | | ||| || |||||||||||||| | ||| | | |||| |||| Sbjct 220847 AATATAACCAGTCTCAGCAGTCTTGACTGCAGTATCAATAAGACCTTCTCTACCAGCCAT 220788 Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350 || |||||||| ||||| | || || || |||| || |||| | |||| ||||| Sbjct 220787 GGCGTGGAAGAAGAATTCGGATGGGGTCAGACCACGAAGGTATGAGTTTTCAACGAATCC 220728 Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410 | || | || || | ||||| || || | || || ||||| || | | || || Sbjct 220727 ACGAGCTTCAGGAGAGTAATCATCCTTGGTGAAGTGCGGCAATGTGCGGTAGTTGAAACC 220668 Query 378411 ATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 | ||||| || || || || || |||| || || Sbjct 220667 GAAGGGAATACGCTTACCCTCCACCATCTGCTGTCC 220632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245178256425