Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq72 383 2e-101 seq272 104 3e-17 >seq72 Length=1307737 Score = 383 bits (424), Expect = 2e-101 Identities = 1145/1742 (66%), Gaps = 40/1742 (2%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || || | |||||||||||| ||||| || ||| ||||| || | ||||||||| Sbjct 1153964 GTACGAAGATAGTACATGCCAGTCTTAAGCCCCAGTTTCCAGCCAGCAAAGTGCATACTG 1153905 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| || | || ||| ||||||||| || || || ||||| ||| Sbjct 1153904 GTAATCTTGCCCATTGAGGGATCCTTCATATGGATGTTGAGAGATTGAGATTGGTCAATG 1153845 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACC-GACTTTTGCGGAATCTCCCAGATGGT 78368 | ||||| || ||||| ||||| | | || ||| || | | ||||||||||| ||| Sbjct 1153844 AAAGCACCTCGATCGGCGGCCATCTGCACAACTTGACGTT-GAGAAATCTCCCAGACGGT 1153786 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCG-GCTC 78427 | ||| | ||||| || || || |||||| | | | | || ||| |||| Sbjct 1153785 CTTGTAGAGAGCCTTGAGGTCATCAGGGATGTTGGGAATGTTTTGGATCGAACCTTGCTC 1153726 Query 78428 -GCACAATTTCA-TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATC---CCG 78482 ||| ||| ||||| || | | ||| | || |||||| | Sbjct 1153725 AGCAATGATTCGGTTCTTCATGGCATCGGACCACAAGCCCAACTCAACAAGATCTTTCAA 1153666 Query 78483 GA-CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 || ||||| |||| | | |||||| || ||||| || || |||||||| Sbjct 1153665 GAGCCAGG----GGTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGT 1153610 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 | | ||||| |||||||| || ||||| || | |||||| | ||| |||||| | Sbjct 1153609 TTGATGTGTAGGGCTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGTACTGGCGGTAG 1153550 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660 |||| || || || || ||| || || | ||| ||| |||||||| | ||| Sbjct 1153549 GCATAGGGGCCACGAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTGCTCTCGAAGGG 1153490 Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | ||||||| ||| | | || ||||||||| |||||||| |||| Sbjct 1153489 TCTCCCACTCCCAAAGGTCAGAGGGGGTGACATTCCACATGTCGAACTGAAGGATTCCCT 1153430 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775 | || || || || |||||||| |||| ||| | || | |||||| |||||||| |||| Sbjct 1153429 CTGAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCGAGTTC-CATG 1153371 Query 78776 -ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834 |||| ||||| || ||||| | || ||||||||| |||||| |||| || ||| Sbjct 1153370 GACTCAGTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTGTTTAGCTGACGAGCC 1153311 Query 78835 TTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCG 78894 | | | ||||| | | || || || ||| |||| || || ||||| || || Sbjct 1153310 TCAGGCGACTCGAAAGGCATGCGTAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCA 1153251 Query 78895 ATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTC 78954 | | | || ||||| || ||||||||||| || || ||| ||| ||||| |||| Sbjct 1153250 AGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTG 1153191 Query 78955 CGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCG 79014 |||||||| ||||||||||||||| || ||||| || || |||| | || Sbjct 1153190 ACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTA 1153131 Query 79015 AAATCAAAAT-GATTTCCTT-TGATGAAAGTCGGTAGGCA----CAGCGATGCCAGGTTG 79068 || | | | || | | || || || || |||| |||||| ||||||||| Sbjct 1153130 AAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTG 1153071 Query 79069 CACACGGCCGTCTCGTCCGG-GCT-AGAAACCTCGATGATTTCTGTGCACAAATTAGACG 79126 || || || ||| || || || || | || || || || ||||| | ||| || Sbjct 1153070 CAAACAGCAACCTCATCGGGAGCGCAGTAT--TCAATAATCTCAGTGCAAAGATTGGAGC 1153013 Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 ||| || || | |||||||||||||||||| ||| || || |||||||| || Sbjct 1153012 TGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCA 1152953 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 || | || | || ||||| || | ||||| || ||| | | | |||| | Sbjct 1152952 TGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACAGCTTCTGGGCAC 1152893 Query 79247 GGACAACCTTCTTGT-ACC--GACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAG 79303 ||| | ||| ||| |||||| | ||| || ||| | | | || Sbjct 1152892 GGAT---CGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAGGGCCTCAAACT 1152836 Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 |||| || ||| || | |||||| |||||||||| |||||||| || ||||| || Sbjct 1152835 CCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCT 1152776 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| ||||||||| || ||||||||| || |||||||| || || ||| ||||| | Sbjct 1152775 CGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTAGGAACAGGTCTC 1152716 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGG 79483 | ||| ||||| || | || || ||| || || || || || || | || || | Sbjct 1152715 GTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAACTCGAAGACATCAG 1152656 Query 79484 CGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGA 79543 |||||| ||||| |||||||| || || | ||| ||||||| ||| ||||| | | Sbjct 1152655 AGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGATCAA 1152596 Query 79544 CGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGT 79603 | || | ||| ||||||||||| ||||| |||||||| | ||| || | || ||||| Sbjct 1152595 CATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGT 1152536 Query 79604 TCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATG-TTCGAGCAGTGGATTCCGATGCCC 79662 | || ||| || | || | || |||||| || | || || ||||| || Sbjct 1152535 TGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAAC-GTTGAGACCGATACCT 1152477 Query 79663 CCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAG 79722 || | | ||| ||||| || || |||||| || |||||||| || || || | Sbjct 1152476 CCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTG 1152417 Query 79723 TCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTG 79782 || ||||||||| |||| |||||||| || | ||| | | | |||||||| ||| Sbjct 1152416 TCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTG 1152357 Query 79783 AAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTG 79842 ||||| || || | || || || |||||||| | | ||| | ||| ||||| || Sbjct 1152356 AAGAGAGTGGGAGAAGCATGAGTAAAGAACTTGTTGGACATGTAGTTGTAGGTCTCGATG 1152297 Query 79843 ACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGG 79901 || || | || || || ||| || || || || ||||||| | || ||| ||| Sbjct 1152296 ACACGTTCAATGTTATCACCCCAGATACCCACAGCAACACGCATGATCATGTGCTGTGGG 1152237 Query 79902 CG 79903 || Sbjct 1152236 CG 1152235 Score = 325 bits (360), Expect = 4e-84 Identities = 928/1418 (65%), Gaps = 34/1418 (2%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || || || ||| || || || | || ||| Sbjct 1152238 CCACAGCACATGATCATGCGTGTTGCTGTGGGTATCTGGGGTGATAACATTGAACGTGTC 1152297 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| || ||| | | |||||||| || || || | || || || ||| Sbjct 1152298 ATCGAGACCTACAACTACATGTCCAACAAGTTCTTTACTCATGCTTCTCCCACTCTCTTC 1152357 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 || |||||||| | | | ||| | || || ||||| || | ||||||||||||| Sbjct 1152358 AATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATGAC 1152417 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 |||||||| || |||||||| || |||||| || || ||||| ||| | | || Sbjct 1152418 AGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAGGA 1152477 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACA----CGAATCAATG---G 19395 |||||||| || || | || ||| ||| |||| || | || || | Sbjct 1152478 GGTATCGGTCTCAAC-GTTCA-----CCGCATTCGTGCTACAGGCTCGTA-CATTGCCGG 1152530 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || ||||| | || | || ||| |||| ||||| || || ||||||||||| ||||| Sbjct 1152531 AACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCAG 1152590 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 || || | ||||| ||| ||| ||| || | || || ||||| |||||||| || Sbjct 1152591 ATATGTTGATCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAGCCCTG 1152650 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||| | || ||| | || ||||| || || || ||| || || | || ||||| || Sbjct 1152651 GCACTCTGATGTCTTCGAGTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAGATCCG 1152710 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 || ||||| ||| || | ||||| || || || |||||| || |||||||| Sbjct 1152711 TGCACGAGACCTGTTCCTAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAA 1152770 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 | |||| | ||| || |||||||| |||| ||||||||||| | ||| |||||| Sbjct 1152771 GAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGG 1152830 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGG 19754 ||||| ||| | | | ||| || || | |||| || | || || | Sbjct 1152831 CGAGGAGTTTGAGGCCCTTTACGAGAAGTATGAGAAGGAGGGTCGTGGTC-GTCAGACGA 1152889 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 |||| |||| | | | ||| || | ||| || ||| |||||| || | || | Sbjct 1152890 TCCGTGCCCAGAAGCTGTGGTACTCGATTCTCGAAGCCCAAACCGAGACTGGTAACCCCT 1152949 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| |||||||| || ||| ||| || ||||||||| | || | ||| Sbjct 1152950 TCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTATCC 1153009 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 ||||| || || ||||| || || || | | || || ||| ||| || | Sbjct 1153010 GCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTGTTT 1153069 Query 19935 GTAATCTGGCGTCCCTG----TGCCTGCCGAC-----TTTCGTCAAGGCCTCCTCCTTCG 19985 | || ||||| || ||| |||| ||| || || || | ||| || || | Sbjct 1153070 GCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGATTACGACGAGG---GCTGCTACA 1153126 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 ||||| || | |||| || || ||||| || |||||| ||||| || |||||| Sbjct 1153127 ACTTTAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCGTAACCTGAACCGTATCATCG 1153186 Query 20046 ATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCG 20105 || |||| ||||| ||| ||| ||||| || ||||| || || || || | Sbjct 1153187 ATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAACATGCGTCATCGACCCATTG 1153246 Query 20106 CGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATC 20165 | || || ||||| || || || | ||| || || || | | ||||| | Sbjct 1153247 GTCTTGGTGTTCAGGGTCTTGCAGATGCATTCTTGGCTCTACGCATGCCTTTCGAGTCGC 1153306 Query 20166 CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGG 20225 | |||| || |||| |||||| ||||||||| | | ||||| || ||||| | Sbjct 1153307 CTGAGGCTCGTCAGCTAAACAAGCAGATCTTCGAGACTATCTACCATGCCGCCCTTACTG 1153366 Query 20226 AATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGT 20285 | || |||||||| || ||| | || || ||| |||| |||||||| || || || | Sbjct 1153367 AGTCCATGGAACTCGCGAAGGAGCAAGGTCCCTACCAGACCTTCAAGGGATCCCCAGCTT 1153426 Query 20286 CCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGA-GTTTTGGAGCG-- 20342 | ||||| ||||| ||| ||||||||| ||||| ||| ||| |||| | Sbjct 1153427 CAGAGGGAATCCTTCAGTTCGACATGTGGAATGTCACCCCCTCTGACCTTTGGGAGTGGG 1153486 Query 20343 ---CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCA 20399 |||| | |||||||| ||||| | |||||| ||||||| || || | Sbjct 1153487 AGACCCTTCGAGAGCAGATCAAGGAGCACGGTATCCGCAACAGTCTGCTCGTGGCCCCTA 1153546 Query 20400 TGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGA 20459 |||| |||||| ||| | |||||| | || ||||| || |||||||| ||||| Sbjct 1153547 TGCCTACCGCCAGTACCTCTCAGATCTTAGGCAACAATGAATGCTTCGAGCCCTACACAT 1153606 Query 20460 CCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 | |||||||||| || ||| ||||| || |||||| Sbjct 1153607 CAAACATCTACTCCCGACGTGTTCTGGCTGGAGAGTTC 1153644 >seq272 Length=795643 Score = 104 bits (114), Expect = 3e-17 Identities = 303/459 (66%), Gaps = 22/459 (5%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 |||| || || ||||| | || || || ||| || || ||||||||| || | | Sbjct 63131 CATTCGCTCAGCGTCTTGTTGCCTTCGCTGCCGTTGAGGGCATCTTCTTCAGCGGTGCTT 63190 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || | | || |||||| | || |||||||| || ||||| || || | |||||||||| Sbjct 63191 TCGCTTCCATCTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACG 63250 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACAC 60149 ||||||| ||||| |||||||| || || || || || || | ||| | || ||| Sbjct 63251 AGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGC-TTGCCTACTCCACTCCCAC 63309 Query 60150 CTATTGGAAAAAT-GCCCTTCCAAGGA---TATTCACAAGATTGTTCAGTGGGCTTGTGA 60205 ||| || ||| || | |||||| ||| | || | ||| || || | Sbjct 63310 CTA----AACAATCGCGCAAGCAAGGAGGTCATTGA-GAGCATCATCACTGACGCCGTCA 63364 Query 60206 -AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTG 60264 | |||| |||||| | || || || ||||| ||| | | || ||| |||| Sbjct 63365 CCATTGAGAAGGAGTTCTTGACCGAGGCTCTTCCTTGCGCCATGCTGGGCATGAACGCCA 63424 Query 60265 GAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGG-----CCCAGTTTGG 60319 |||| |||||| || ||||||| || ||||| || ||| | | || | Sbjct 63425 ACCTTATGAAGCAGTATATCGAGTTTGTTGCCGACCGTCTTCTGGTTGCTCTCGGTAACG 63484 Query 60320 AGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGA 60379 | |||| | ||| || |||||| ||||||| ||||||| ||| || | | Sbjct 63485 ACAAGG-----TGTACAAGTCGACTAACCCCTTCGACTTCATGGAGAACATTTCCCTTGG 63539 Query 60380 AGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||||||||| |||||||| ||||| || || Sbjct 63540 CGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 63578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521543134000