Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq72 244 1e-59 seq272 95.1 1e-14 >seq72 Length=1307737 Score = 244 bits (270), Expect = 1e-59 Identities = 416/594 (70%), Gaps = 8/594 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || |||||||| ||||| || |||||| ||||| ||| Sbjct 1152251 TCATGCGTGTTGCTGTGGGTATCTGGGGTGATAACATTGAACGTGTCATCGAGACCTACA 1152310 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| | | |||| |||||| || || | || || || ||||| || ||||| Sbjct 1152311 ACTACATGTCCAACAAGTTCTTTACTCATGCTTCTCCCACTCTCTTCAATGCCGGTACCC 1152370 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || ||||| | || |||||||| || | |||||||||||| || ||||| | Sbjct 1152371 CCCAGGCTCAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATGACAGCATTGACGGTA 1152430 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||| ||| | | || ||||||||| || Sbjct 1152431 TCTACGATACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAGGAGGTATCGGTCTCA 1152490 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | || | || | ||||| | ||| | || || || |||||| || | Sbjct 1152491 AC-GTTC-ACCGCATTCGTGCTACAGGCTCGTACATTGCCGGAACCAACGGCACATCCAA 1152548 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||||||| | || ||||| || || ||||||||||| ||| | || || | |||||||| Sbjct 1152549 TGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCAGATATGTTGATCAGGGTGG 1152608 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 |||||| || | || || ||||| |||||||| |||||| | || | | || Sbjct 1152609 CAACAAGCGCCCTGGTGCCTTTGCTATCTATCTCGAGCCCTGGCACTCTGATGTCTTCGA 1152668 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| || || || || |||||| || | |||||||| || ||| || |||||||| Sbjct 1152669 GTTCCTGGATCTTCGAAAGAATCACGGAAAGGAAGAGATCCG-TGCACGAGACCTGTTCC 1152727 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 |||||| ||||| || || ||||||||| | || |||||| ||||| | ||| | Sbjct 1152728 TAGCTCTATGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAAGAACGAGAACTGGACTC 1152787 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTT 53782 | |||||||| ||||||||||| ||||| | | || |||||| ||||||||| Sbjct 1152788 TCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTG-CTACGGCGAGGAGTTT 1152840 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || ||||| ||||| | ||| ||||| || || ||||| |||||| ||| || |||| Sbjct 1153828 GCCGATCGAGGTGCTTTCATTGACCAATCTCAATCTCTCAACATCCATATGAAGGATCCC 1153887 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 ||| ||| |||| | | | ||||||||| || ||||| ||| || ||||| || Sbjct 1153888 TCAATGGGCAAGATTACCAGTATGCACTTTGCTGGCTGGAAACTGGGGCTTAAGACTGGC 1153947 Query 55907 ATGTACTATCTGCGGAC 55923 ||||||||||| || || Sbjct 1153948 ATGTACTATCTTCGTAC 1153964 >seq272 Length=795643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || || || || | || |||||||| || ||||||||||||||||| |||||| Sbjct 63257 ATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAGATG 63198 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | ||| | ||| |||||||||||||| || || || ||||| ||||| || || Sbjct 63197 GAAGCGAAAGCACCGCTGAAGAAGATGCCCTCAACGGCAGCGAAGGCAACAAGACGCTGA 63138 Query 74904 GCGAA 74908 ||||| Sbjct 63137 GCGAA 63133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212750905000