Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq72 232 8e-56 seq273 185 1e-41 seq200 143 3e-29 seq322 140 4e-28 >seq72 Length=1307737 Score = 232 bits (256), Expect = 8e-56 Identities = 1126/1762 (64%), Gaps = 68/1762 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || |||||||||||||| ||||| || ||| |||||||| | |||| Sbjct 1153970 GCCTGAGTACGAAGATAGTACATGCCAGTCTTAAGCCCCAGTTTCCAGCCAGCAAAGTGC 1153911 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| | | ||| | | || ||| | || ||| |||||| ||||| ||||| || Sbjct 1153910 ATACTGGTAATCTTGCCCATTGAGGGATCCTTCATATGGATGTTGAGAGATTGAGATTGG 1153851 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA-TTGACTTTTGTGGAATTTCCCA 80210 |||||||| || ||||| || ||||| | | || ||||| || | | ||| ||||| Sbjct 1153850 TCAATGAAAGCACCTCGATCGGCGGCCATCTGCACAACTTGACGTT-GAGAAATCTCCCA 1153792 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACT 80264 || || || | |||| || || || || |||| || ||||| | | Sbjct 1153791 GACGGTCTTGTAGAGAGCCTTG---AGGTCATCAGGGATGTTGGGAATGTTTTGGA---T 1153738 Query 80265 GCCACCGTCCTTTACAAT---TTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTG 80321 ||| | || |||| | | || |||| || | ||| | || | || Sbjct 1153737 CGAACCTTGCTCAGCAATGATTCGGTTCTTCATGGCATCGGACCACAAGCCCAACTCAAC 1153678 Query 80322 CAGATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACG 80378 |||||||||| || | | ||| | | || ||||||| || || || || Sbjct 1153677 AAGATCTTTCAAGAGCCAGGGGTTGACGACCTGGA---ACTCTCCAGCCAGAACACGTCG 1153621 Query 80379 CAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGT 80438 || | ||||| ||||| ||||| || || ||||| || | |||||||| || Sbjct 1153620 GGAGTAGATGTTTGATGTGTAGGGCTCGAAGCATTCATTGTTGCCTAAGATCTGAGAGGT 1153561 Query 80439 GCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATC 80498 || || || ||||| ||| | || | ||| || || | ||||||| |||||| | Sbjct 1153560 ACTGGCGGTAGGCATAGGGGCCACGAGCAGACTGTTGCGGATACCGTGCTCCTTGATCTG 1153501 Query 80499 CTCGCGCAAA---TCTGAC---CAAAAATCAACCCCAACGCTGTGACC--CCACATGTCG 80550 ||| || | || || |||| ||| | | ||||| |||||||||| Sbjct 1153500 CTCTCGAAGGGTCTCCCACTCCCAAAGGTCAG-----AGGGGGTGACATTCCACATGTCG 1153446 Query 80551 TGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTC 80610 ||| | ||| ||||| || || || || ||| ||| |||| ||| || || | | | Sbjct 1153445 AACTGAAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTGGTAGGGACCTTGCTCC 1153386 Query 80611 TTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTG 80670 || || || || ||||| ||||||| || || || || ||| |||| |||| Sbjct 1153385 TTCGCGAGTTCCATGGACTCAGTAAGGGCGGCATGGTAGATAGTCTCGAAGATCTGCTTG 1153326 Query 80671 TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730 || | || |||| || ||||| | || || | || ||| | || || Sbjct 1153325 TTTAGCTGACGAGCCTCAGGCGACTCGAAAGGCATGCGTAGAGCCAAGAATGCATCTGCA 1153266 Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGG 80789 || |||||||| || | | || || || || ||| |||| | | || |||||| | Sbjct 1153265 AGACCCTGAACACCAAGACCAATGGGTCGATGACGCATGTT-GCTGTTGCGTGCCTCCTG 1153207 Query 80790 AATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC 80849 || ||||| |||| |||||||| ||||||||||| || | |||||||||||| Sbjct 1153206 AACGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAAC 1153147 Query 80850 ATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-----TCA-CAAATGCCGGAAGGCT 80903 || || || |||| ||||| | | | | | | ||| | | || || || Sbjct 1153146 TTCGTGGAGCTTCTTAAAGTTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGC 1153087 Query 80904 CAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGT 80963 ||| || ||||| ||||| || || ||||| || | | | | || | || || || Sbjct 1153086 CAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGT 1153027 Query 80964 GCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 ||| | ||| || || ||||||||||| |||||||| ||| ||||||||| Sbjct 1153026 GCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGC 1152967 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 |||||||| |||| | ||| |||| |||||| || | | ||| || | || ||| Sbjct 1152966 ATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCA 1152907 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 | || | || || | || || || || | ||||||| ||||| Sbjct 1152906 CAGCTTCTGGGCACGGATCGTCTGACGACCACGACCCTCCTTCTCATACTTCTCGTAAAG 1152847 Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | || |||| | |||| | ||| ||| ||| | |||||||||||||||||||| | Sbjct 1152846 GGCCTCAAACTCCTCGCCGTAGCAGT-CAGCCAGGCCAGGGCACTCGTTAGGGCACATGA 1152788 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 | ||||| || ||||| || ||||||||| ||||||||||| || || Sbjct 1152787 GAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCTA 1152728 Query 81263 TGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAG 81321 ||||||||| || ||| || ||| || | || || || || | || || || Sbjct 1152727 GGAACAGGTCTCGTGCA-CGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAAC 1152669 Query 81322 TCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGG 81378 || | || || | ||||| ||||| ||||| | || | | || ||| | Sbjct 1152668 TCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTG 1152609 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||| | || || | |||||| ||| || || |||| ||| |||||||| ||| Sbjct 1152608 CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCA 1152549 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGC--TGA--- 81493 | || ||||| || || | || ||| || | || || | ||| ||| Sbjct 1152548 TTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAA---TGCGGTGAACG 1152492 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 ||| |||||||| || |||| | |||||| ||| ||||| || | || || | Sbjct 1152491 TTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGT 1152434 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || || ||||| || | ||||| || | | ||| || ||| | |||| || Sbjct 1152433 AGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGA--GC 1152376 Query 81614 TTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC-GGTTTGACA 81670 | | | ||||||||||| || || || | || ||| | ||| ||| ||| |||| Sbjct 1152375 CTGGGGGGTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGT-AAAGAACTTGTTGGACA 1152317 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | || ||||| || |||| ||| ||| | ||||| ||||| | ||| |||| Sbjct 1152316 TGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAGATACCCACAGCAACAC 1152257 Query 81731 GCATAAACATGTACTG-GGGCG 81751 |||| | ||||| ||| ||||| Sbjct 1152256 GCATGATCATGTGCTGTGGGCG 1152235 >seq273 Length=2741725 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 1841587 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCT 1841528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || |||||||||||||||||||| ||||| ||||| Sbjct 1841527 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATCCCTCCTGACCAA 1841468 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||||||||| || ||||||| || ||||| | ||||| || Sbjct 1841467 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 1841408 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 1841407 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 1841361 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| || || || || || ||| Sbjct 1841073 ATGCAGATTTTCGTCAAGACACTCACGGGAAAGACTATCACACTGGAAGTCGAATCATCG 1841014 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 1841013 GACACGATTGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAG 1840954 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || || | |||||||| | ||||| || Sbjct 1840953 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAAC 1840894 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||||| ||||| || || | ||||| || || || || Sbjct 1840893 ATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCCA 1840844 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || |||||||||||||| || || ||||| || || ||| | ||| | Sbjct 1841289 GTCAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTCGAATCTTCTGACACCATCGAC 1841230 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || ||||||||||||||||| || ||||| ||||| ||||| || || Sbjct 1841229 AACGTTAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAACAGCGCCTGATC 1841170 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| |||||||||| || ||||| | ||||| || |||| ||||| Sbjct 1841169 TTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAG 1841110 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || | || | ||||| || ||||| Sbjct 1841109 TCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 1841075 >seq200 Length=1806557 Score = 143 bits (158), Expect = 3e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || |||||||| ||||| || | ||| Sbjct 889295 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCAT 889236 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || ||||||||||||||||||||||| || ||||| ||||| || Sbjct 889235 TGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGCCT 889176 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||||| || ||||| ||||||| || |||| || Sbjct 889175 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAA 889116 Query 27594 GG 27595 || Sbjct 889115 GG 889114 >seq322 Length=957674 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| || || ||||| ||||| Sbjct 93716 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 93657 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || ||||| Sbjct 93656 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAA 93597 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || ||||| | ||||| || Sbjct 93596 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 93537 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 93536 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTGCGTGGTGG 93490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307013782000