Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq181 100 2e-16 >seq181 Length=2234860 Score = 100 bits (110), Expect = 2e-16 Identities = 253/384 (66%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 |||||| || || || ||||| | || ||| ||||||||||| || ||| ||| || Sbjct 229301 GTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCAT 229242 Query 30142 GCGCCTGTCTTCTGGGTT--------GTTCCTG-ATGAGGTCCACGGCGTTTTGCAGCTG 30192 || | ||| | ||||| ||| || ||||| || |||| ||||| Sbjct 229241 CCGGCGGTCGTAAGGGTTCGTGCGGAGTTTGTGGATGAGCTC---GGCG------AGCTG 229191 Query 30193 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30252 || || ||| || | |||||| | | | ||| |||||| || || || |||| Sbjct 229190 GTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCCG 229131 Query 30253 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30312 ||||||||||||||| || || |||||||| ||| | || | || | ||| ||| Sbjct 229130 CCACTGGAACCCGTAGACGGGGCCCAGGTCACCCACCTCGCGATGGGTCAGGCCGAGCTT 229071 Query 30313 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTC 30372 ||| | || || | || |||||| ||||||||||||| || |||| ||| |||| | Sbjct 229070 GTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCGC 229011 Query 30373 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30432 || |||| || || |||||| || ||||| | || ||| || Sbjct 229010 GAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGAA 228951 Query 30433 GACCCTCTTGGTCGTGAGGAGGGG 30456 ||| | || |||||||||||||| Sbjct 228950 GACTCGTTTCGTCGTGAGGAGGGG 228927 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | |||||| | ||| ||||| | | |||| | |||| || ||||| Sbjct 229604 GGGGAACGGCCGGGGCTCGCGCTCCAGCTGCTCCCTGAGCGCGTTGACGTGGTCGAGGTA 229545 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 |||||| ||||| |||| | |||| | ||| ||||| | | || |||||| | Sbjct 229544 GACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGGG 229486 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | | ||||| ||| || || | ||||||||||||||| || || || || || ||||| | Sbjct 229485 CGAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATAT 229426 Query 30018 CCCCCGACCTCTGGTAGAGCTGACA 30042 | | || | |||||| ||||| || Sbjct 229425 CGCAGGAACGCTGGTACAGCTGGCA 229401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308047843700