Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq273 89.7 3e-13 seq322 84.2 1e-11 >seq273 Length=2741725 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||| || || ||| |||||| || ||||| || || || Sbjct 1840846 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1840905 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||||||||| || || || || || || | |||||| ||||| || || Sbjct 1840906 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 1840965 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTC--TC 34655 | |||||||| || |||||| | || || | ||| ||||| || | || Sbjct 1840966 AATACCCTCCTTATCCTGGATCTTC-GACTTCACATTGTCAATCGTGTC--CGATGATTC 1841022 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || || || || || | || || || ||||||||||| Sbjct 1841023 GACTTCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| ||| |||||| || ||||| || || || || || || Sbjct 1841084 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1841143 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||||||||| || || | |||||| Sbjct 1841144 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGGATACCCTCC 1841203 Query 34609 TTGTC 34613 ||||| Sbjct 1841204 TTGTC 1841208 >seq322 Length=957674 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || || || || || |||| || || || Sbjct 93514 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 93573 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||||||||| || || | ||||||||||| |||| || Sbjct 93574 TTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATC-TT 93632 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| |||||| || | ||| || || || || || Sbjct 93633 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGT 93692 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || ||||||||||| ||| Sbjct 93693 GAGGGTCTTGACGAAAATCTGCATCTTG 93720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727778010675