Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq181 138 1e-27 >seq181 Length=2234860 Score = 138 bits (152), Expect = 1e-27 Identities = 218/305 (71%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--C 34378 ||| || ||||||||||||| ||||||| || || || || ||||||| || | | Sbjct 229025 GGGCGTCAAGATCTGGGACGGCAACGGGTCGCGCGAGTTCCTCGACAAGCTCGGCCTGAC 229084 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| ||| |||| ||| ||| ||||||| |||||||||||||||||| | ||||||||| Sbjct 229085 CCA--TCGCGAGGTGGGTGACCTGGGCCCCGTCTACGGGTTCCAGTGGCGGCACTTTGGG 229142 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGT 34496 || ||||| || | | ||| | ||||| | || ||||| | |||||||| || | Sbjct 229143 GCCGAGTA-CGTCGACTCCAAGACCGACTACACCGGCCAGGGCGTCGACCAGCTCGCCG- 229200 Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 | | ||| ||| | ||||||| | ||| | |||| | ||| ||||||| Sbjct 229201 AGCTCATCCACAAACTCCGCACGAACCCTTACGACCGCCGGATGATCCTGTCGGCGTGGA 229260 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 |||| ||||| | || |||| ||| ||||| ||||||| || ||| ||||||| Sbjct 229261 ACCCCAAGGACATGCCCAACATGGTGCTGCCCCCCTGCCACATGTTCGCCCAGTTCTACG 229320 Query 34617 TCGCG 34621 || || Sbjct 229321 TCTCG 229325 Score = 138 bits (152), Expect = 1e-27 Identities = 218/305 (71%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| || ||||||| ||||| ||| |||| || | ||||| Sbjct 229325 CGAGACGTAGAACTGGGCGAACATGTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTT 229266 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||||| ||| | |||| | ||| | ||||||| | ||| ||| Sbjct 229265 GGGGTTCCACGCCGACAGGATCATCCGGCGGTCGTAAGGGTTCGTGCGGAGTTTGTGGAT 229206 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901 | | | || |||||||| | ||||| || | ||||| | ||| | | || ||| Sbjct 229205 GAGCT-CGGCGAGCTGGTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACG-TAC 229148 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || ||||||||||| | |||||||||||||||||| ||||||| ||| ||| |||| ||| Sbjct 229147 TCGGCCCCAAAGTGCCGCCACTGGAACCCGTAGACGGGGCCCAGGTCACCCACCTCGCGA 229088 Query 6962 GATGGG--AACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCA 7019 |||| | || ||||||| || || || || ||||||| ||||||||||||| | Sbjct 229087 --TGGGTCAGGCCGAGCTTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGA 229030 Query 7020 CCCCC 7024 | ||| Sbjct 229029 CGCCC 229025 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | || ||||| | || || ||||||||||| || || Sbjct 229400 CTGCCAGCTGTACCAGCGTTCCTGCGATATGGGCCTGGGCGTCCCGTTCAACATCGCCAG 229459 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| ||||| ||| ||||| |||| || ||| | |||| || ||| || | Sbjct 229460 CTACGCGCTGCTGACGCACATGCTCGCCCACGTCTGCGACATGGTGCC-GGGCAG-TCTC 229517 Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 | |||| |||| || ||||| ||||||| ||||| || | |||| || ||| Sbjct 229518 ACCCACGTCATGGGCGACGCGCACGTCTACCTCGACCACGTCAACGCGCTCAGGGAGCAG 229577 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 ||| | || |||||||| ||||||||| |||| Sbjct 229578 CTGGAGCGCGAGCCCCGGCCGTTCCCCGAGCT 229609 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||||||| |||||||| || | |||||| || |||| | || ||||| Sbjct 229609 AGCTCGGGGAACGGCCGGGGCTCGCGCTCCAGCTGCTCCCTGAGCGCGTTGACGTGGTCG 229550 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGA 6617 ||||||| ||||| || |||| |||| | | || ||| || |||| | || Sbjct 229549 AGGTAGACGTGCGCGTCGCCCATGACGTGGGTGAGA-CTGCCC-GGCACCATGTCGCAGA 229492 Query 6618 CATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACC 6677 | || |||| ||||| ||| ||||| ||||| || || ||||||||||| || || | | Sbjct 229491 CGTGGGCGAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGC 229432 Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||| || | || || || || ||||||||| Sbjct 229431 CCATATCGCAGGAACGCTGGTACAGCTGGCAG 229400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259738442000