Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq181 96.9 3e-15 >seq181 Length=2234860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 252/384 (66%), Gaps = 18/384 (5%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 |||||| || || || ||||| | || ||| ||||||||||| || ||| ||| || Sbjct 229301 GTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCAT 229242 Query 27408 GCGCCTGTCTTCTGGGTT--------GTTCCTG-ATGAGGTCCACGGCGTTTTGCAGCTG 27458 || | ||| | ||||| ||| || ||||| || |||| ||||| Sbjct 229241 CCGGCGGTCGTAAGGGTTCGTGCGGAGTTTGTGGATGAGCTC---GGCG------AGCTG 229191 Query 27459 ATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 || || ||| || | |||||| | | ||| |||||| || || || |||| Sbjct 229190 GTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCCG 229131 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 27578 ||| ||||||||||| || || |||||||| ||| | || | || | ||| ||| Sbjct 229130 CCACTGGAACCCGTAGACGGGGCCCAGGTCACCCACCTCGCGATGGGTCAGGCCGAGCTT 229071 Query 27579 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 27638 ||| | || || | || |||||| ||||||||||||| || |||| |||| |||| | Sbjct 229070 GTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCGC 229011 Query 27639 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 27698 || |||| || || |||||| || ||||| | || ||| || Sbjct 229010 GAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGAA 228951 Query 27699 GACCCTCTTGGTCGTGAGGAGGGG 27722 ||| | || |||||||||||||| Sbjct 228950 GACTCGTTTCGTCGTGAGGAGGGG 228927 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||| || || | |||||| | ||| ||||| | | |||| | ||||| || ||||| Sbjct 229604 GGGGAACGGCCGGGGCTCGCGCTCCAGCTGCTCCCTGAGCGCGTTGACGTGGTCGAGGTA 229545 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 |||||| ||||| |||| | |||| | ||| ||||| | | || |||||| | Sbjct 229544 GACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGGG 229486 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | | ||||| ||| || || | ||||||||||||||| || || || || || ||||| | Sbjct 229485 CGAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATAT 229426 Query 27284 CCCCCGACCTCTGGTAGAGCTGACA 27308 | | || | |||||| ||||| || Sbjct 229425 CGCAGGAACGCTGGTACAGCTGGCA 229401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505060899725