Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq72 210 3e-49 >seq72 Length=1307737 Score = 210 bits (232), Expect = 3e-49 Identities = 579/873 (66%), Gaps = 26/873 (3%) Strand=Plus/Minus Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACA 77743 || || || || ||||| || ||||||| | | ||| |||| || ||||| || || Sbjct 1153082 GAAGCCAGGTTGCAAACAGCAACCTCATCGG-GAGCGCAGTATTCAATAATCTCAGTGCA 1153024 Query 77744 TAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTC 77803 ||||| | |||||| ||||| || | ||||||||||| ||||| | || Sbjct 1153023 AAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATC 1152964 Query 77804 CTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 77863 ||| ||||| || || || | || || || | || | ||||| ||| || | ||| | Sbjct 1152963 CTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGAATCGAGTACCACA- 1152905 Query 77864 GACTCTAG-CTTTTATCATA-GATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATA 77919 | ||| | | ||| | || | || | ||| | ||||| | ||| | Sbjct 1152904 GCTTCTGGGCACGGATCGTCTGACGACCA-CGACCCTCCTTCTCATACTTCTCGTAAAGG 1152846 Query 77920 GCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCA 77979 ||| ||||| || || || | ||| ||| |||||||| || || |||||||| | Sbjct 1152845 GCC--TCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGA 1152788 Query 77980 ATGACCAGT-CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 78038 | ||||| | | ||||| | ||| || ||||| ||||||||||| ||||||||||| Sbjct 1152787 GAGTCCAGTTCTCGTTCTTC-TCAACGCGCTTCATGAAGAGATCAGGGATCCATAGAGCT 1152729 Query 78039 ATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAAC 78098 | || || ||||| | | ||||| ||||| ||||||| |||||| || ||| Sbjct 1152728 AGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGATCCAGGAAC 1152669 Query 78099 TCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTA 78158 || | | |||||| ||||| || || ||||| || || | | ||||| || || || Sbjct 1152668 TCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCAGGGCGCTTGTTG 1152609 Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||||||||| ||||| || | |||| || ||| || || || || Sbjct 1152608 CCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCA 1152549 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| || || ||||| | ||| || || | || ||||| || | Sbjct 1152548 TTGGATGTGCCGTTGGTTCCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG 1152489 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || |||||||||||||| || || | || || || | |||||||||||| Sbjct 1152488 AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATA 1152429 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 78398 || || || ||||||||| |||| | | ||| || || || | ||| || Sbjct 1152428 CCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGG 1152369 Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATT 78457 || || ||||| || | || ||||| ||||| ||||| | || | || | |||| || Sbjct 1152368 GTACCGGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAGAACTTGTTGGACATGTAG-TT 1152310 Query 78458 GTATGTTTCAATAGCTGATTCTATGT------CCCATTGATGAATTCCTACCGCTACACG 78511 ||| || || || | ||| |||| |||| || || || || ||||| Sbjct 1152309 GTAGGTCTCGATGACACGTTCAATGTTATCACCCCA------GATACCCACAGCAACACG 1152256 Query 78512 CATCAACATATGCTGAGGTCTTTCAACCGTCTT 78544 ||| | ||| ||||| || | ||||| |||| Sbjct 1152255 CATGATCATGTGCTGTGGGCGCTCAACAATCTT 1152223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664675404000