Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq322 111 4e-19 seq273 111 4e-19 seq200 95.1 3e-14 >seq322 Length=957674 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 93504 GAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 93563 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||| ||||| | | ||| || ||||| || Sbjct 93564 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGGGGATGCCCTCCTTGTC 93623 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || || || || ||||| Sbjct 93624 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGT 93683 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||| | |||||| || || Sbjct 93684 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 93722 >seq273 Length=2741725 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| |||| | || | Sbjct 1841369 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 1841428 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || || | ||| ||||| | | |||||| || Sbjct 1841429 GCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATTCCCTC 1841488 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | | || ||| ||| || || || || Sbjct 1841489 CTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCGAGGGT 1841548 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||| | |||||| Sbjct 1841549 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 1841587 Score = 100 bits (110), Expect = 7e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || ||||| || ||||| || ||||||||||| || | | || | Sbjct 1840855 GAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTACG 1840914 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| || |||||||| || | ||||||||| | | || || Sbjct 1840915 GCCGTCTTCAAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCC 1840972 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| | || | |||| || || ||||| || Sbjct 1840973 TCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGATTCGACTTCCAGT 1841032 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || |||||||| ||||| ||||| | |||||| Sbjct 1841033 GTGATAGTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | ||||| || | Sbjct 1841095 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGA 1841153 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| || | ||| ||||| | | ||| || ||||| || |||| Sbjct 1841154 GCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 1841213 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | |||| ||| || || || || || ||||| |||| Sbjct 1841214 TCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATAGTCTTGC 1841273 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||| ||||| |||| Sbjct 1841274 CGGTGAGGGTCTTGACGA 1841291 >seq200 Length=1806557 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | ||||| || || || ||||||||||| Sbjct 889116 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 889175 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||| | | ||||| ||||| || ||||| || |||||| | || Sbjct 889176 AGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 889235 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || ||||| || || || |||||||| || |||||||||||| Sbjct 889236 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 889295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813777918725