Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F000963775.2_202015-04-21] 475 sequences; 55,416,396 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq322 179 3e-40 seq200 136 4e-27 seq273 134 1e-26 seq135 82.4 7e-11 >seq322 Length=957674 Score = 179 bits (198), Expect = 3e-40 Identities = 181/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || ||| ||||||||| ||||| ||||||| Sbjct 93488 CGCCACCACGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 93547 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||||||| |||| |||||||||||||||||||| ||||||||||||||||| | || Sbjct 93548 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCGGGGG 93607 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| ||| | | | |||||| |||||| Sbjct 93608 GGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCC 93666 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || ||||| |||||||||||||| || Sbjct 93667 ACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 93719 >seq200 Length=1806557 Score = 136 bits (150), Expect = 4e-27 Identities = 141/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||||||||| | || |||||||||||||||||||| | Sbjct 889114 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 889173 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||||||||| | ||||| | |||||||||| ||| | || | | || | Sbjct 889174 TCAGGCGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 889232 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 889233 TCAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 889292 Query 41852 AA 41853 || Sbjct 889293 AA 889294 >seq273 Length=2741725 Score = 134 bits (148), Expect = 1e-26 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1841361 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841420 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| ||||||||||||||||| | || Sbjct 1841421 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 1841480 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| | || | ||| || | || | || || ||||| Sbjct 1841481 ATTCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTATCAGAAGACTCG 1841537 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||| ||||||||||||||| Sbjct 1841538 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATG 1841588 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1841075 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1841134 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || ||||||||||||||||| | || Sbjct 1841135 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGG 1841194 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | |||| | | | ||||| || || || Sbjct 1841195 ATACCCTCCTTGTCC-TGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGAC 1841253 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 1841254 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 1841291 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 1840846 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1840905 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || |||| || |||||||| || ||||| || || ||||| ||||| | || Sbjct 1840906 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 1840965 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCA 41813 || | |||||| ||| ||| || ||||| | | || ||||| || || | Sbjct 1840966 AATACCCTCCTTATCCTGGATCTTCGACTTCA-CATTGTCAATCGTGTCCGATGATTCGA 1841024 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || ||||| || ||||| |||||||||||||| Sbjct 1841025 CTTCCAGTGTGATAGTCTTTCCCGTGAGTGTCTTGACGAAAATCTGCAT 1841073 >seq135 Length=1329384 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || ||||| || || ||||||||||| |||| || |||||| ||| ||||| || Sbjct 28333 CGCATCGCCCCCCGATCCGGCCTCGCGTCCAAGAACTTCATCGACACGGGTGCCGGCGTG 28274 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 || ||||||||||||||||| | |||| | | ||||||||||||| ||| Sbjct 28273 ATTGACGCCGACTACCGCGGCGAGGTCAAAGTTCTCCTCTTCAACCACGCCGA 28221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301255070000