Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 140 7e-28 >seq9 Length=1081052 Score = 140 bits (154), Expect = 7e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGG-CATGAACGCTGAACT 230468 || ||||||||| | ||| || |||| || |||| | ||| ||||||||| | || Sbjct 1020203 GAGAAGGAGTTCTTGACTGAGGCCCTTCCTTG-CGCCATGCTGGGCATGAACGCCAACCT 1020145 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| ||||||||||| || || |||||||| || | || || || || |||| || Sbjct 1020144 GATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTCGCTCTCGGCAACGACAA 1020085 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| || | |||||||| | || |||||| ||| || ||| ||| || || Sbjct 1020084 GGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAGGCAAAAC 1020025 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||| ||| ||||||| |||| | | ||||| ||| Sbjct 1020024 CAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAGGCCGGTGTCATG 1019976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057813333497810