Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq127 143 3e-29 >seq127 Length=80722 Score = 143 bits (158), Expect = 3e-29 Identities = 461/707 (65%), Gaps = 30/707 (4%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 27656 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 27597 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||||||||| ||||| ||||| | || || |||| | | || || ||||| Sbjct 27596 AAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 27537 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||||| ||| || || ||| | | | |||||| ||||| || || | || || Sbjct 27536 TGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 27477 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 27476 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 27417 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| || ||| || || || |||||||||| || ||||| |||| || || || Sbjct 27416 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT 27357 Query 54281 CTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 27356 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 27299 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || || | ||||| ||||| || || || || |||||| |||| | | || | Sbjct 27298 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 27239 Query 54399 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 | || || | | ||| | || || || ||||| |||| || |||||||| Sbjct 27238 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCA 27183 Query 54455 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTAT------ 54507 || ||||| | || | || | |||| ||||| |||||||| | || || Sbjct 27182 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 27124 Query 54508 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 54567 | |||| ||| || || | |||||||| | |||||| || || | ||||| || Sbjct 27123 ACCCCA------AATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCAACAAT 27070 Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 |||| ||| | || || | ||||| |||| || || ||||| || || | || Sbjct 27069 CTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATA 27010 Query 54628 --TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 27009 GTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 26965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715759263760