Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq87 165 8e-36 seq9 165 8e-36 seq4 123 3e-23 seq6 122 9e-23 >seq87 Length=157873 Score = 165 bits (182), Expect = 8e-36 Identities = 178/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| |||| || || | Sbjct 70422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 70481 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 70482 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 70540 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 70541 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 70600 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||||||| |||| || || || ||| | ||| || | || |||| Sbjct 70601 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGGCG 70653 >seq9 Length=1081052 Score = 165 bits (182), Expect = 8e-36 Identities = 318/461 (69%), Gaps = 11/461 (2%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||| | ||||||||| | || | || | |||| |||| | Sbjct 1020487 AGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCCACATTCGCTCAGCGTC 1020428 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| |||||||||||| ||||||| || |||||| | || || | Sbjct 1020427 TTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTATTTTCT 1020368 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| || || || ||||| || || || ||| ||||||||| |||||| | | Sbjct 1020367 GGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTG 1020308 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || ||||| || || | || | ||| || | || | | Sbjct 1020307 ACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCATCTGAACAACCGCGCAA 1020248 Query 117222 GCGCGGCGCGCGTCAGGGAG---ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCC 117278 || || | |||| ||| ||| |||| ||||| ||| |||| ||| || ||| Sbjct 1020247 GCAAGGAG---GTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGAAGGAGTTCT 1020191 Query 117279 TCACCGAAGCGCTGCCGGTGCGTC-TGCTGGGACTCAATTGCGAAAC-GATGTCGCAATA 117336 | || || || || || |||| | ||||||| | || || || | |||| ||| || Sbjct 1020190 TGACTGAGGCCCTTCC-TTGCGCCATGCTGGGCATGAA-CGCCAACCTGATGAAGCAGTA 1020133 Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACAC 117396 ||||||||| || |||||| | || ||| ||| || | | || |||| ||||| | Sbjct 1020132 CATCGAGTTTGTTGCCGACCGTCTTCTGGTCGCTCTCGGCAACGACAAGGTGTACAAGTC 1020073 Query 117397 GCCCAACCCGCTGGACTTTATGAACCTCATCT-CCTTGGAG 117436 | ||||||| | ||||| ||| | ||||| |||||||| Sbjct 1020072 GACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAG 1020032 Score = 154 bits (170), Expect = 2e-32 Identities = 210/287 (73%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| ||| || || |||||||| | ||||| | || ||| Sbjct 1020888 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATCTG 1020829 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | || ||||||| |||||||| | ||| || Sbjct 1020828 TCCAAGGATCTCCA-CGACTGGCACACCCGTATGAACGATGACGAGCGCTACTTCGTCTC 1020770 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || ||||| ||||| ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 1020769 TCACGTTCTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGCG 1020710 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || | | |||| ||| | | ||||| || ||||||||||| || ||||| | Sbjct 1020709 CTTCAGCGCTG-AGGTCCAGATTCCTGAGGCTCGTTGCTTCTACGGATTCCAGATTATGA 1020651 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| || | || || |||||| ||||| ||| Sbjct 1020650 TGGAGAACATCCACTCAGAGACCTACTCCCTCCTCATTGACACATAC 1020604 >seq4 Length=1629322 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | | Sbjct 924892 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 924951 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || |||| ||||| ||||| || ||| | ||||| || || || Sbjct 924952 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTG 925011 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||| Sbjct 925012 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAAG 925071 Query 40879 G 40879 | Sbjct 925072 G 925072 >seq6 Length=1479970 Score = 122 bits (134), Expect = 9e-23 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| ||||||||| |||| |||||| | | |||| | | Sbjct 795835 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCG 795776 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| | ||| || |||| ||||| ||||| || || | ||||| || || || Sbjct 795775 ACAACGTT-AAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTG 795717 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 795716 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 795657 Query 40879 GAGGCCACGCTGCA 40892 || |||| || || Sbjct 795656 GAATCCACCCTCCA 795643 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| | | Sbjct 796131 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 796072 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||| || || | ||||| Sbjct 796071 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 796012 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 796011 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 795952 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 795951 ATCCAGAAGGAGTCTACCCTCCACCTGGT 795923 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || ||||| | || ||||| | | Sbjct 795617 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACTATCACACTGGAAGTCGAGTCATCG 795558 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | ||| || || | || || ||||| ||||| | ||||| Sbjct 795557 GACACGATTGACAATG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 795499 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || ||||| |||||||| Sbjct 795498 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAA 795439 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 795438 CATTCAGAAGGAGTCCACCCTTCACCTGGT 795409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214131531120