Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-22 seq87 113 4e-20 seq4 89.7 4e-13 >seq6 Length=1479970 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| | ||||| |||||| Sbjct 795923 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 795982 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| | || || ||||| || || ||||| || ||||||||||| | Sbjct 795983 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGA 796042 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||| | || | || ||| Sbjct 796043 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTG 796102 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || |||||||||||| Sbjct 796103 CCGGTGAGGGTCTTGACGAAAATCTGCATG 796132 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || || || || || |||||||| ||| | ||||| |||||| Sbjct 795636 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 795695 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || ||||| || |||||||| || ||||||||||| Sbjct 795696 AAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTG 795755 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| | |||| |||||| | |||||||||| ||| | || || Sbjct 795756 AATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTCTT 795815 Query 118709 GCCGGTCAGAGTTTTTAC 118726 |||||| || || || || Sbjct 795816 GCCGGTGAGGGTCTTGAC 795833 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || ||||||||||| || | || || || || Sbjct 795409 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCA 795468 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||||||||||||||| || ||||| || |||||||| || Sbjct 795469 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGG 795528 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||||| |||||| || | || | || || Sbjct 795529 ATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTTT 795588 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||||||||| Sbjct 795589 CCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 >seq87 Length=157873 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||| | ||||| ||||| Sbjct 70634 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 70575 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 70574 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 70515 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||||| ||| | || || Sbjct 70514 GATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTT 70455 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 70454 CCCCGTGAGGGTCTTGACGAAAATCTGCAT 70425 >seq4 Length=1629322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| |||||||||||| || || ||| |||| Sbjct 925070 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 925011 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 |||||||| || || || || || ||||||||||| ||| || || || | || Sbjct 925010 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 924951 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | | ||||||||| | ||| | || ||||| ||||| || || || || Sbjct 924950 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826238888604