Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq87 107 2e-18 seq6 89.7 6e-13 >seq87 Length=157873 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 70616 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 70557 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| ||| Sbjct 70556 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 70498 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| ||||| || || ||||| || ||||| | Sbjct 70497 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGA 70438 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 70437 CGAAAATCTGCATCTT 70422 >seq6 Length=1479970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| || || || |||| || |||||||| |||||||| Sbjct 795426 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAA 795485 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||| ||| ||| || || | | Sbjct 795486 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTCGACTTCACATT 795545 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||| || || || || || ||||| || Sbjct 795546 GTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGAC 795605 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 795606 GAAAATCTGCAT 795617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811974744360