Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 143 2e-29 seq87 98.7 9e-16 seq127 86.0 6e-12 >seq9 Length=1081052 Score = 143 bits (158), Expect = 2e-29 Identities = 272/393 (69%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| |||||| |||| ||||| | | | |||| ||||| || | Sbjct 1020489 CAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCCACATTCGCTCAGCG 1020430 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATAT 58032 || | || |||||||||||||| || || ||||| || ||||| || | || | Sbjct 1020429 TCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGT-GCTTTCGCTTCTATTT 1020371 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| ||||||| || || |||||||| || || || || ||||||| |||| || | Sbjct 1020370 TCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCC 1020311 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | ||||||||||| || ||||| || || |||||| | |||| || | | || || | Sbjct 1020310 GTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTCCCA---TCTGAACAACC 1020254 Query 58153 -CG-ACGC-GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 || | || ||| ||| | ||| ||||| || || ||| | || || || |||| Sbjct 1020253 GCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGAAGGAGT 1020194 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | | || || ||||| || |||||||| || |||||| | ||||| ||| Sbjct 1020193 TCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTGATGAAGCAGT 1020134 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 |||| ||||||||||||||| | ||| || ||| Sbjct 1020133 ACATCGAGTTTGTTGCCGACCGTCTTCTGGTCG 1020101 >seq87 Length=157873 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || |||||| |||| || || | Sbjct 70422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 70481 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 70482 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 70541 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| ||||| ||| | || ||| Sbjct 70542 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 70580 >seq127 Length=80722 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/218 (70%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || || || ||||| || | || || || || ||| |||||||||||| | | Sbjct 28501 GGTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGG 28442 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | ||||| |||||||||| |||| ||||||| ||| || || ||||| || |||| Sbjct 28441 GCTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCA 28382 Query 22572 ACAGTAGCGAGTTTCTCAAGCCGTG--CTTTGAAATTTTACTCTTG-AGCATCGACCAGT 22628 || || ||| | | ||||| |||||| | | |||| | ||| || ||| | Sbjct 28381 CGAGCAGACTGTTGCGGATACCGTGCTCTTTGA---TCTGCTCTCGAAGCGTCTCCCACT 28325 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 |||| || || || || || ||||| |||||| ||| Sbjct 28324 CCCAAAGGTCAGAGGGGGTGACATT---CCACATGTCG 28290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762014773040