Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 120 6e-22 seq127 104 5e-17 >seq9 Length=1081052 Score = 120 bits (132), Expect = 6e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||| || || || || || |||||||| |||||||| ||||| || ||||||| Sbjct 1020427 TTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTATTTTCT 1020368 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | ||| | ||||||||||||||| |||||| ||| | || || | | Sbjct 1020367 GGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTG 1020308 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGC 102064 |||| |||||||| ||||| || ||| Sbjct 1020307 ACGAGGGTCTTCACACTGACTTCGCTTGC 1020279 >seq127 Length=80722 Score = 104 bits (114), Expect = 5e-17 Identities = 411/641 (64%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 94408 TCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCAC 94467 ||||| |||||||| | |||| |||||| ||||| | | ||| | |||||||||||| Sbjct 27707 TCATACTTCTCGTATAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCAC 27648 Query 94468 TCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC---ACTCTCTCCATGAAGAGA 94524 |||| |||||||| || | ||| |||| | |||| || | || |||||||||| Sbjct 27647 TCGTTAGGGCACATGAGAGTCCAGTTCT---CGTTCTTCTCAACGCGCTTCATGAAGAGA 27591 Query 94525 TCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCT--TCATTACCGGCAT 94582 |||| | ||| | ||| |||| || || |||| | | |||| || || ||| || Sbjct 27590 TCAGGGATCCACAGAGCCAGGAACAGGTC--TCGTGCACGGATCTCTTCCTTTCCGTGAT 27533 Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGA-TGCCAATCAGAAATATAGATGGCT 94641 |||||| ||| | ||| || || || ||| ||||| | |||||| || Sbjct 27532 TCTTTCGAAGGTCCAGAAACTCGAAGACATC-AGAGTGCCAGGGCTCGAGATAGATAGCA 27474 Query 94642 GCAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATT 94701 || || | ||||| || ||||| ||| | | | ||| | ||| || | | Sbjct 27473 AAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACT 27414 Query 94702 TGGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGACGAAATGGGGCTTCCTTTT 94761 | || | | |||| ||| | || || | | |||| ||| | Sbjct 27413 CGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCTGTA 27354 Query 94762 GCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCC 94821 || | | |||| || || |||| ||||| || |||| ||||| || || Sbjct 27353 GCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAG 27294 Query 94822 TCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCAC 94881 ||| |||||||| || ||||| |||||||| ||||| | | | | ||||||||| Sbjct 27293 GTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCAT 27234 Query 94882 GAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAA 94941 || || || || | | || || ||| || || ||||| |||||||| ||||| Sbjct 27233 GATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAG 27174 Query 94942 TAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATG 95001 | | | |||||| | || || || |||||| || |||| || ||| Sbjct 27173 AACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAAATA 27114 Query 95002 CCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || |||| |||||||| ||||||| || ||||||||||| Sbjct 27113 CCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCAAC 27073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574021591585