Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq127 138 1e-27 >seq127 Length=80722 Score = 138 bits (152), Expect = 1e-27 Identities = 427/655 (65%), Gaps = 22/655 (3%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || || ||||| ||||||||||| ||||| ||||| | || || |||| || | Sbjct 27608 ACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATC 27549 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || ||||| ||||||| ||| || || ||| | | | |||||| ||||| || Sbjct 27548 TCTTCCTTTCCGTGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGC 27489 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | || || || | | || || || ||||| || |||||||| | ||||| || Sbjct 27488 TCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCA 27429 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||||| || | |||| || ||| || || || || || ||| | || |||||||||| Sbjct 27428 GTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCA 27369 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63564 || || || | |||||||| || ||| ||||| || || |||||||| | Sbjct 27368 ATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCT 27311 Query 63565 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 | ||||| | || || || | || || ||||| || || ||||| ||||| ||| Sbjct 27310 TTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCA 27251 Query 63625 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAG 63684 | | | || || || || | || | | || || ||||| |||| || | Sbjct 27250 TATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGAGTGG 27191 Query 63685 GAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 ||||||| || ||||| | || | || | |||| ||||| ||||| || | || Sbjct 27190 GAGAAGCATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCA 27132 Query 63744 AT------ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 || | |||| ||| || || | |||||||| | |||||| || || | Sbjct 27131 ATGTTATCACCCCA------AATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGC 27078 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 |||||||| ||| ||| | || | | ||||| |||| || || ||||| || Sbjct 27077 TCAACAATCTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAG 27018 Query 63858 TAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || | || ||||| ||||| || || | ||| | || | |||| ||||| Sbjct 27017 TACTGATAGTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 26965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811404169360