Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq127 134 2e-26 >seq127 Length=80722 Score = 134 bits (148), Expect = 2e-26 Identities = 459/707 (65%), Gaps = 30/707 (4%) Strand=Plus/Minus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 27656 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 27597 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 ||||||||||| ||||| ||||| | || | |||| | | || || ||||| Sbjct 27596 AAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 27537 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||||| ||| || || ||| | | | |||| | ||||| || || | || || Sbjct 27536 TGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 27477 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 27476 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 27417 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| || ||| || || || ||||||||||| || ||||| |||| || || || Sbjct 27416 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT 27357 Query 66312 CTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 27356 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 27299 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | || || | ||||| ||||| || || || || |||||| |||| | | || | Sbjct 27298 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 27239 Query 66430 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 66485 | || || | | ||| | || || || ||||| |||| || |||||||| Sbjct 27238 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCA 27183 Query 66486 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTAT------ 66538 || ||||| | || | || | |||| ||||| ||||| || | || || Sbjct 27182 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 27124 Query 66539 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 66598 | |||| ||| || || | |||||||| | |||||| || || | ||||| || Sbjct 27123 ACCCCA------AATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCAACAAT 27070 Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 |||| ||| | || | | ||||| |||| || || ||||| || || | || Sbjct 27069 CTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATA 27010 Query 66659 --TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 27009 GTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 26965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166325225080