Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-22 seq127 113 7e-20 >seq9 Length=1081052 Score = 122 bits (134), Expect = 1e-22 Identities = 338/512 (66%), Gaps = 25/512 (5%) Strand=Plus/Minus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || || | ||| || || ||||| | |||| ||||| |||||| | ||| | || || Sbjct 1020503 GTTCCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCC 1020444 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | ||| | | || || || ||||||||||| |||||||||||||| ||| | Sbjct 1020443 ACATTCGCTCAGCGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCT 1020384 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || || | || || ||| | |||||||| || || ||||| || || || | ||| Sbjct 1020383 TTCGCTTCTATTTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAAC 1020324 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||| | || || || |||||||| || ||| |||||| || |||| | | | | Sbjct 1020323 GAGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTAC---TCCACTCC 1020267 Query 125592 TATCTG--CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCG 125646 ||||| | || | ||| ||| | | ||||||| | ||| | || | Sbjct 1020266 CATCTGAACAACC---GCGCA-----AGCAAGG---AGGTCATTGAGAGCATCATCACTG 1020218 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | ||||| | || || | ||||| | || || |||| || | |||| | |||| Sbjct 1020217 ACGCCGTCACCATTGAGAAGGAGTTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCA 1020158 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| ||| || ||| ||||||| |||||||| || || ||||| ||| || Sbjct 1020157 TGAACGCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTCG--- 1020101 Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | ||| || |||| | ||||| | | || ||||| || |||||| | ||| | Sbjct 1020100 CTCTCGGCAACGACAAGGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCT 1020041 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || | || || |||||||| ||||||||| Sbjct 1020040 CCCTTGGAGGCAAAACCAACTTCTTCGAGAAG 1020009 Score = 120 bits (132), Expect = 5e-22 Identities = 203/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| | || || || ||||| | || || |||||||| Sbjct 1020888 ATCTGGCAAATGTACAAGAAGCACGAAGCTTCTTTCTGGACTGCTGAGGAAATCGATCTG 1020829 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | || ||| ||| || ||||| | || | || Sbjct 1020828 TCCAAGGATCTCCACGACTGGCACACCCGTATGAACGATGACGAGCGCTACTTCGTCTCT 1020769 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | |||||||| || | ||| ||||| || ||||| || || || ||||| || Sbjct 1020768 CACGTTCTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGA-GCG 1020710 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | ||||| |||| ||| ||||| ||||||||||| || |||| Sbjct 1020709 CTTCAGCGCTGAGGTCCAGATTCCTGAGG-CTCGTTGCTTCTACGGATTCCAGATTATGA 1020651 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | ||||| || ||||||| ||||| Sbjct 1020650 TGGAGAACATCCACTCAGAGACCTACTCCCTCCTCATTGACACATACAT 1020602 >seq127 Length=80722 Score = 113 bits (124), Expect = 7e-20 Identities = 370/567 (65%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| ||| ||| | | || ||||| || ||| ||| || || || | Sbjct 27376 ACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACACTGCCA-G 27434 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| ||||| ||||| || || || || || | || |||| | || || || Sbjct 27435 ATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCTATCTATCTCGAGCCCTG 27494 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| | || || || || ||| | || | || || || || |||||| || Sbjct 27495 GCACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACGGAAAGGAAGAGATCCG 27554 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| |||| || || ||| | || ||| | |||||||||||||| | | Sbjct 27555 TGCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAA 27614 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | |||||| || |||||||| || || || || ||| | || |||| || Sbjct 27615 GAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGG 27674 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 ||| |||||||||||| ||| | || || | ||||| || ||| |||||| Sbjct 27675 CGAGGAGTTTGAGGCCCTATACGAGAAGTATGAAAAGGAGGGTCGTGGTCGTCAGACGA- 27733 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || ||| | |||| |||||| | | ||| | || || |||||||| | || Sbjct 27734 TCCGTGC-CCAGAAGCTGTGGTACTCGATCCTCGAAGCCCAAACCGAGACTGGTAACCCC 27792 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| || ||||||||| | || || || |||||||| || |||| || ||| Sbjct 27793 TTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTGGGTACTATC 27852 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 |||||||||| ||||| || ||| | || ||| | |||| || ||| || ||| Sbjct 27853 CGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCGCTCCCGATGAGGTTGCTGTT 27912 Query 97344 TGCGTTCTGGCATCGGTCAATCTGCCC 97370 ||| ||||| ||| | ||||||| Sbjct 27913 TGCAACCTGGCTTCGCTGGCTCTGCCC 27939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051909830120