Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11 118 2e-22 seq27 107 3e-19 >seq11 Length=1054237 Score = 118 bits (130), Expect = 2e-22 Identities = 89/102 (87%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||||||||| |||| Sbjct 941423 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 941365 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 941364 TCCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 941323 >seq27 Length=480618 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 353820 GCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 353762 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 353761 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 353721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074480440391