Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq127 134 2e-26 seq9 93.3 5e-14 >seq127 Length=80722 Score = 134 bits (148), Expect = 2e-26 Identities = 459/707 (65%), Gaps = 30/707 (4%) Strand=Plus/Minus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||| | | ||| | ||| | || || || ||||| Sbjct 27656 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 27597 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 ||||||||||| ||||| ||||| | || || |||| | | || || ||||| Sbjct 27596 AAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 27537 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||||| ||| || || ||| | | | |||||| ||||| || || | || || Sbjct 27536 TGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 27477 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 27476 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 27417 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| || ||| || || || || || ||| | || |||||||||| || || || Sbjct 27416 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT 27357 Query 63468 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 | |||||||| || ||| ||||| || || |||||||| || ||||| | | Sbjct 27356 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 27299 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | || || | || || |||||||| || ||||| ||||| |||| | | || | Sbjct 27298 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 27239 Query 63586 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 | || || | | ||| | || || || ||||| |||| || |||||||| Sbjct 27238 AGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCA 27183 Query 63642 TGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTAT------ 63694 || ||||| | || | || | |||| ||||| ||||| || | || || Sbjct 27182 TGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATGTTATC 27124 Query 63695 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63754 | |||| ||| || || | |||||||| | |||||| || || | ||||| || Sbjct 27123 ACCCCA------AATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCAACAAT 27070 Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 |||| ||| | || | | ||||| |||| || || ||||| || || | || Sbjct 27069 CTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTACTGATA 27010 Query 63815 --TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 27009 GTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 26965 >seq9 Length=1081052 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| ||||||||||| | || || |||||||| || ||||| Sbjct 1020280 CAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGA 1020339 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || | ||| || || |||||||| | ||| |||||| Sbjct 1020340 CCAGGCATCAGACCACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAG 1020399 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || || || || || || ||||||| ||| Sbjct 1020400 ATGCCCTCGACGGCGGCGAAGGCAACAAG 1020428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941071756920