Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq127 334 2e-86 >seq127 Length=80722 Score = 334 bits (370), Expect = 2e-86 Identities = 986/1493 (66%), Gaps = 54/1493 (4%) Strand=Plus/Plus Query 363595 CAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGAC 363654 ||| | || || ||||| ||| | | |||||||| || ||| || ||||||| || Sbjct 27223 CAGCTCTCATCATGCTTCCTTGTCGATATGAAGGATGACAGCATTGACGGTATCTACGAT 27282 Query 363655 ACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCA 363713 || || |||| ||||| | || || |||| ||||| || || ||| | | || || | Sbjct 27283 ACTCTCAAGACCTGTGCCATGATCTCAAAGATGGCAGGAGGTATCGGTCTCAACGTTC-A 27341 Query 363714 CAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTG 363771 | ||||||| |||| || ||||| ||| || | || | | || ||||| | Sbjct 27342 CCGCATTCGTGCTACAGGCTCGT-ACATTGCCGGTACCAACGGCACA-TCCAATGGAATC 27399 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 | |||||||| || ||||| |||| ||||| || || || || |||||||| ||| Sbjct 27400 ATCCCCATGCTGCGAGTGTTCAACAACACTGCCAGATATGTTGATCAGGGTGGCAACAAG 27459 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 ||| || || |||||||| ||||||||||| || | ||| | || |||||||| Sbjct 27460 CGCCCCGGTGCCTTTGCTATCTATCTCGAGCCCTGGCACTCTGATGTCTTCGAGTTTCTG 27519 Query 363892 GAGCTCCGGAA-AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACT 363950 || || || || || ||| ||||| || || | |||||||| || |||||| || || Sbjct 27520 GACCTTCGAAAGAATCAC-GGAAAGGAAGAGATCCGTGCACGAGACCTGTTCCTGGCTCT 27578 Query 363951 TTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG--GCAGGTAAGAATTGGTCACTCTTT 364008 ||| | |||| | || ||||||||||| ||| | | | |||| ||| | ||| | Sbjct 27579 GTGGATCCCTGATCTCTTCATGAAGCGCGTTGAGAAGAACG--AGAACTGGACTCTCATG 27636 Query 364009 TGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||||| |||| || || || || | || | || || || | || || |||||| Sbjct 27637 TGCCCTAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGAGGAGTTTGAGGCCCTATAC 27696 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || ||||||||| |||||| | |||| |||| || | || |||||||| |||| Sbjct 27697 GAGAAGTATGAAAAGGAGGGTCGTGGTCGTCAGACGATCCGTGCCCAGAAGCTGTGGTAC 27756 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 | ||| | || | || | ||||| || | |||| ||| | ||||| ||| | ||| Sbjct 27757 TCGATCCTCGAAGCCCAAACCGAGACTGGTAACCCCTTCATGCTTTACAAGGATGCTTGC 27816 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGA 364247 ||||| ||| ||||||| || |||| ||||| | || |||| ||| || || || || Sbjct 27817 AACCGTAAGAGCAACCAGAAGAACCTGGGTACTA-TCCGCAGCTCCAATCTTTGCACTGA 27875 Query 364248 GATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||||||||||| ||||||||| ||| ||| || || ||||| || ||| | || || Sbjct 27876 GATTATTGAATACTGCGCTCCCGATGAGGTTGCTGTTTGCAACCTGGCTTCGCTGGCTCT 27935 Query 364308 TCCGGCGT---TTG--TA-AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAAC 364361 || || | ||| || | || || | || | || | || | || || || Sbjct 27936 GCCCGCCTACGTTGATTACGACGAGGGCTGCTACAACTTCAAGAAGCTCCACGAAGTTAC 27995 Query 364362 -----CTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATT 364416 |||| ||| | || || || | ||||| || || || || || Sbjct 27996 ACGGGTTATCGTGC-----GTAACCTGAACCGTATCATCGATGTCAACTACTACCCCGTT 28050 Query 364417 CCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGG 364471 | || || || ||| || ||||||||||| || |||||||||||||| |||| Sbjct 28051 CAGGAGGCACGCAACAGC-----AACATGCGTCATCGACCCATTGGTCTTGGTGTTCAGG 28105 Query 364472 GCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTC 364531 | || || || | || || || ||| | || || |||||||| |||||| | Sbjct 28106 GTCTTGCAGATGCATTCTTGGCTCTGCGCATGCCTTTCGAGTCGCCTGAGGCTCGTCAGC 28165 Query 364532 TAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG-CTTCGTGTGATTTG 364590 | |||||| ||||||| || ||||| || |||||| | |||| | | || | | | Sbjct 28166 TGAATAAGCAGATCTTCGAGACAATCTACCATGCCGCCCTTACTGAGTCCATGGAACTCG 28225 Query 364591 GCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTC 364650 || | ||| || ||| || | |||| ||||| ||| |||||| | Sbjct 28226 CGAAGGAGCAA-GGTCCCTACCAGACCTTCAAGGGATCCCCAGCTTCAGAGGGAATCCTT 28284 Query 364651 CAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCC 364710 ||||| || | ||||||||||| || |||| || ||| | ||||| ||||| || Sbjct 28285 CAGTTCGACATGTGGAATGTCACCCCCTCTGACCTTTGGGAGTGGGAGACGCTTCGAGAG 28344 Query 364711 AACGTTAAGAAGCATGGTACTCGCAAC--TC-CCTCGTTACAGCGCCCATGCCCACGGCT 364767 | | || |||| |||| |||||| || ||||| || || |||||||| || Sbjct 28345 CAGATCAAAGAGCACGGTATCCGCAACAGTCTGCTCGT---GGCTCCTATGCCCACAGCC 28401 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 ||| | |||||| | || ||||| || |||||||| || | ||| ||| | || Sbjct 28402 AGTACCTCTCAGATCTTGGGCAACAATGAATGCTTCGAGCCCTACACATCCAACATCTAC 28461 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887 || || || ||||| | ||||| || | ||| || || | || | || |||||| Sbjct 28462 TCCCGACGTGTTCTGGCTGGAGAGTTCCAGGTCGTCAACCCCTGGCTCTTAAAAGATCTT 28521 Query 364888 TCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 || || ||||| || |||||||||| || || || | | ||||| Sbjct 28522 GTTGAGTTGGGCTTGTGGTCCGATGCCATGAAGAACCGAATTATTGCTGAACAAGGTTCG 28581 Query 364948 GTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAA 365007 | || ||||| || | || || || || ||| | | ||||| ||||| ||||| Sbjct 28582 ATCCAAAACATCCCCAACATCCCTGATGACCTCAAGGCCCTCTACAAGACCGTCTGGGAG 28641 Query 365008 ATTTCCATGCGAACTCTCATTG---ATATGGCGGCCGATCGCGGTGCTTTTAT 365057 ||||| | | || ||| | ||||| |||||||| |||||||| || Sbjct 28642 ATTTC---TCAACGTCAAGTTGTGCAGATGGCCGCCGATCGAGGTGCTTTCAT 28691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340457715434