Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq87 132 5e-26 seq127 127 2e-24 seq6 118 1e-21 seq4 87.8 2e-12 >seq87 Length=157873 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| || ||||| | || | ||| |||||||| || |||||||| ||| Sbjct 70652 GCCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 70593 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 70592 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 70533 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 70532 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 70473 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || || || || |||||||||||||| Sbjct 70472 CTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 70425 >seq127 Length=80722 Score = 127 bits (140), Expect = 2e-24 Identities = 598/938 (64%), Gaps = 24/938 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| ||||| || |||| ||||| || | || | ||| || ||| |||| Sbjct 28499 TTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGGGC 28440 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | || || ||||||| ||| |||| ||| | || |||||||| ||||| Sbjct 28439 TCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCACG 28380 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | ||||||| ||||| | || ||||| |||| |||| Sbjct 28379 AGCAGACTG--TTGCGGATACCGTGCTCTTTGATCTGCTCTCGAAGCGTCTCCCACTCCC 28322 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 | || || || | || | |||||||||| |||| | || ||||| | | |||| Sbjct 28321 AAAGGTCAGAGGGGGTGACATTCCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGG 28262 Query 145295 CTGCCTTGAAAGGAACTGTA---AC--TGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT 145349 | ||||| |||| ||| || ||| || || ||||| || || | | || Sbjct 28261 ATCCCTTG-AAGGTCTGGTAGGGACCTTGCTCC-----TTCGCGAGTTC-CA--TGGACT 28211 Query 145350 C---CAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCAT 145406 | || ||| | || ||||||||| || ||| | || ||| | || ||| Sbjct 28210 CAGTAAGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTCAGCTGACGAGCCTCAG 28151 Query 145407 CGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 |||| | ||||||||||| | || ||||| || || ||||| | || | | Sbjct 28150 GCGACTCGAAAGGCATGCGCAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAGAC 28091 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGG 145525 | ||||| ||||| ||||||||| | | ||| || | || || | | | || Sbjct 28090 CAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTGAC-A 28032 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAG 145585 ||||| || |||| ||| ||||| | ||| ||||| | | | ||| | ||| Sbjct 28031 TCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTGAAG 27972 Query 145586 TCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 | | | ||||||| | || || | || | ||| |||| || ||| Sbjct 27971 TTGTAGCAGCCCTCGTCGTAATCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAA 27912 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || ||| |||| ||| ||||| | ||||| | ||| | |||| | | Sbjct 27911 ACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCGG 27852 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 || || ||||| || | ||| || || || | |||||| || |||||||| |||||| | Sbjct 27851 ATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAG 27792 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACC 145825 || |||||||| || | || | ||| | || | ||| ||||| | | Sbjct 27791 GGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAGCTTCTGGGCACGGATC 27732 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 ||| | || ||||| | ||| || ||| ||| || |||||||| | ||| Sbjct 27731 GTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATAGGGCCTCAAACTCCTCGCCG 27672 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 ||||| || | |||||| || |||| ||| || ||||| || | ||| |||| Sbjct 27671 TAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTC 27612 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 | ||||||| ||| || | ||| || | |||||| || Sbjct 27611 TCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGC 27574 >seq6 Length=1479970 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| Sbjct 795905 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 795964 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||| ||||| ||||| Sbjct 795965 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGA 796024 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || ||| ||||| | || | ||||| | ||||||| Sbjct 796025 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 796084 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | || | ||| || ||||| || || || ||||||||||||||||| Sbjct 796085 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGAC 796134 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||| |||||||| ||||||||||| || Sbjct 795390 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 795449 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| || |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 795450 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 795509 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| ||| ||| | | || | || || | ||||||| Sbjct 795510 GATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGAC 795569 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || |||||||||||||| Sbjct 795570 TTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| || ||||| || |||||||| ||| Sbjct 795619 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 795678 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||| ||||| ||||| Sbjct 795679 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 795738 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | || || | || |||| Sbjct 795739 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACC 795798 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || ||||| || || || |||| Sbjct 795799 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 795835 >seq4 Length=1629322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | |||||| ||||| ||||||||||| ||| ||| Sbjct 925072 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 925013 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||| ||||| || || ||||| || ||||| || || ||||| | | Sbjct 925012 TCAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 924953 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 924952 CAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 924893 Query 131225 A 131225 | Sbjct 924892 A 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472008156574080