Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq127 149 8e-31 >seq127 Length=80722 Score = 149 bits (164), Expect = 8e-31 Identities = 465/712 (65%), Gaps = 30/712 (4%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||| | | ||| | ||| | || || || | Sbjct 27661 CCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCT 27602 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| ||||||||||| ||||| ||||| | || || |||| | | || || | Sbjct 27601 TCATGAAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCT 27542 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| ||||||| ||| || || ||| | | | |||||| ||||| || || | | Sbjct 27541 TTCCGTGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGAT 27482 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | || || || ||||| || |||||||| | ||||| || ||||| | Sbjct 27481 AGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGT 27422 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | |||| || ||| || || || ||||||||||| || ||||| || | || || Sbjct 27421 TGAACACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACG 27362 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | |||||||| || ||| ||||| || || |||||||| || ||||| Sbjct 27361 AGCCTGTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGAT 27304 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | ||||| ||||| || || || || |||||| |||| | | Sbjct 27303 CATGGCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGAC 27244 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAG 63491 || || || || | | ||| | || || || ||||| |||| || |||| Sbjct 27243 AAGGAAGCATGATGAGA---GCTGA-GCCTGGGGGGTACCGGCATTGAATAGAGTGGGAG 27188 Query 63492 AAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTAT- 63549 |||| |||||||| | || | || | |||| ||||| ||||| || | || || Sbjct 27187 AAGCATGAGTAAAGAACTTGTTGGACATGTAG-TTGTAGGTCTCGATGACACGTTCAATG 27129 Query 63550 -----ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 | |||| ||| || || | |||||||| | |||||| || || | ||| Sbjct 27128 TTATCACCCCA------AATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCA 27075 Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 || |||||| ||| | || | | ||||| |||| || || ||||| || || Sbjct 27074 ACAATCTTGCCGTTGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTAC 27015 Query 63665 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 | || ||||| ||||| || || | ||| | |||| || | ||||| Sbjct 27014 TGATAGTTGAAA--TCTCGGTCATAGACAATGGCAGAGTCCAGCTCGTCCTT 26965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625766645200