Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 >seq6 Length=1479970 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | ||||| || ||||||| |||| || || || |||||||| ||||| Sbjct 795833 GTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCGAC 795774 Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 | ||| | || | ||| ||||| || || ||||| || ||||||||||| | || Sbjct 795773 AACGTTAAGTCGAAGATTCAG-GACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGAT 795715 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||||| ||||| || | || |||| ||||| | ||| ||||| || || || || Sbjct 795714 CTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 795655 Query 25190 ATCCACGCTACATTTAGTGCT 25210 |||||| || || || ||||| Sbjct 795654 ATCCACCCTCCACTTGGTGCT 795634 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||| ||| Sbjct 796131 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 796072 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || ||| | || | ||| ||||| || || ||||| |||||| Sbjct 796071 GATACCATCGA--CAATGTCAAGTCGAAGATTCAG-GACAAGGAGGGAATTCCTCCTGAC 796015 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| || || || || | || |||| ||||| | ||| ||| Sbjct 796014 CAACAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTAC 795955 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || || Sbjct 795954 AACATCCAGAAGGAGTCTACCCTCCA 795929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323843707405