Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 129 5e-25 seq87 120 3e-22 seq4 116 3e-21 >seq6 Length=1479970 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || ||| | | || ||| | ||| | | || Sbjct 795821 ACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCGACAACGTTAAGTCG 795762 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| ||||| ||||| || || || ||||| ||||| Sbjct 795761 AAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGATCTTTGCTGGCAAG 795702 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| ||||||| |||||||| || || ||||||||| | || Sbjct 795701 CAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAATCCACCCTCCAC 795642 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 795641 TTGGTGCTCCGTCTGCGTGGTGGT 795618 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||||||||| || || | | Sbjct 796131 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 796072 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| ||||||||||| ||||| || || ||| Sbjct 796071 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 796012 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| ||||||| ||||||| |||||| Sbjct 796011 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 795952 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 795951 ATCCAGAAGGAGTCTACC 795934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || ||||| || | | Sbjct 795617 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACTATCACACTGGAAGTCGAGTCATCG 795558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || || ||||||||||| || || || || Sbjct 795557 GACACGATTGACAATGTGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAG 795498 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | || || ||| ||| | || || |||||| Sbjct 795497 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAAC 795438 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 795437 ATTCAGAAGGAGTCCACC 795420 >seq87 Length=157873 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || |||| || || ||||| | Sbjct 70422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 70481 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 70482 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 70541 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| ||||||| ||||||| ||| Sbjct 70542 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 70601 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 70602 AACATCCAGAAGGAGTCCACC 70622 >seq4 Length=1629322 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||| ||| | ||| || |||| Sbjct 924907 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATTGACAATGTCAAGTCC 924966 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 924967 AAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTGATCTTCGCCGGCAAG 925026 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | |||||| ||||||| |||| || |||||||| || || Sbjct 925027 CAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAA 925070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723974152655