Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq41 111 3e-19 seq9 100 6e-16 >seq41 Length=362133 Score = 111 bits (122), Expect = 3e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| ||||| | ||||||| ||||| || ||||| ||||| | Sbjct 255172 CCAACTTCGGTCTGGACGCCGAGCTCGTCTCTCACTCCCGCATGCGTGGTCTGTCTGGTG 255231 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| | | || |||| |||||| | |||||| ||||||| Sbjct 255232 GCCAGCGTGTCAAGACTGTCCTTGCCGCTTGCTC-GTGGCAGCGACCTCACTTGATCGTC 255290 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || |||||||||||||||||||||||||| || ||| || || ||| Sbjct 255291 CTTGACGAGCCTACCAACTATCTGGACCGTGACTCCCTCGGTGCCCTG 255338 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||||||||| |||| ||||| || || || |||| ||||||||||| ||| Sbjct 253800 GGCGAGGATCTGTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTGAAC 253859 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 253860 CAGACCCATCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 253919 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 253920 GGAAAGTCTACTCTGATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 253978 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | ||||| Sbjct 253979 GAGCGAAGTCAAGACTGTCTTCGTCGAGCACGACCTGGACTC 254020 >seq9 Length=1081052 Score = 100 bits (110), Expect = 6e-16 Identities = 292/438 (67%), Gaps = 20/438 (5%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||| | || ||||| ||||||||||||||||||||| || Sbjct 1020013 TCGAAGAAGTTGGTTTTGCCTCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTC 1020072 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTAC--GAAGATGCGGTCTGCCACAAACTCCA 251680 | |||||| |||| | ||| || || || ||||| ||||| || |||||||| | Sbjct 1020073 GACTTGTACACCTTGTCGTTGCCGAGAGCGACCAGAAGA--CGGTCGGCAACAAACTCGA 1020130 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGA 251740 ||||| |||||| | | ||||||||| | ||| ||||||| |||||| | Sbjct 1020131 TGTACTGCTTCATCAGGTTGGCGTTCATGCCCAGCATGGCGCAAGGAAGGGCCTCAGTCA 1020190 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCT--GTGCCAG 251795 ||| ||||| || ||| || || || | || || | |||| ||| | Sbjct 1020191 AGAACTCCTTCTCAATGGTGACGGCGTCAGTGATGATGCTCTCAATGACCTCCTTGCTTG 1020250 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCC 251853 | | ||||| ||| | |||| || | || || || | || ||| |||||| Sbjct 1020251 CG--CGGTTGTT---CAGATGGGAGTGGAGTAGGCAAGCGAAGTCAGT--GTGAAGACCC 1020303 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| || ||| | ||||||||| | || |||||||||| ||||| ||| | Sbjct 1020304 TCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCTTC 1020363 Query 251914 AGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972 | |||||| || | || |||| | ||| ||| | | |||||||| | | || Sbjct 1020364 AACCAGAAAATAGAAGCGAAAGCA-CCACTGAAGAAGATGCCCTCGACGGCGGCGAAGGC 1020422 Query 251973 AACAAGGCGCTCAGCAAA 251990 |||||| |||| ||| || Sbjct 1020423 AACAAGACGCTGAGCGAA 1020440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027826435871867