Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq87 179 7e-40 seq6 176 8e-39 seq9 125 1e-23 seq41 123 5e-23 seq8 89.7 9e-13 seq35 87.8 3e-12 >seq87 Length=157873 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| || |||||| Sbjct 70651 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 70592 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 70591 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 70532 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 70531 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 70472 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 70471 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 70425 >seq6 Length=1479970 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || || ||||| || |||||||| || |||||| Sbjct 795905 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 795964 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || ||| Sbjct 795965 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGA 796024 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 796025 ATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 796084 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 796085 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 796131 Score = 170 bits (188), Expect = 4e-37 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || |||||||| || |||||| Sbjct 795619 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 795678 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || || | ||||||||||| ||| Sbjct 795679 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 795738 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| ||||||||||| | ||||| || Sbjct 795739 ATACCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACC 795798 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 795799 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 795835 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || || ||||| || || || Sbjct 795391 CCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAA 795450 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || ||||| || || Sbjct 795451 AGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 795510 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||| || || || ||||| | ||| || ||| Sbjct 795511 ATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACT 795570 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || ||||| ||||||||||||||||| |||||||| Sbjct 795571 TCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 >seq9 Length=1081052 Score = 125 bits (138), Expect = 1e-23 Identities = 272/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| ||||| | Sbjct 1019976 CATGACACCGGCCTTCTGGTAGTCACCGACGCGCTTCTCGAAGAAGTTGGTTTTGCCTCC 1020035 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT-CTCGGCGCCAAACTGCTTGGGGTAAC 10053 ||||| ||| |||||||||||| |||||||| ||| | || |||| || | Sbjct 1020036 AAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTCGAC-TTGTACACCTTGTCGTTGC 1020094 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 |||| || | || ||||| || || |||||||||||||| ||||||||| | || Sbjct 1020095 CGAGAGCGACCAGAAGACGGTCGGCAACAAACTCGATGTACTGCTTCATCAGGTTGGCGT 1020154 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| | |||| ||| || | ||| || | ||| ||||| || ||| ||| | Sbjct 1020155 TCATGCCCAGCATGGCGCAAGGAAGGGCCTCAGTCAAGAACTCCTTCTCAATGGTGACGG 1020214 Query 10174 CTTCCTCGACGATGCTCT---TTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || || |||||||| | ||| | | | | |||||| || | || | Sbjct 1020215 CGTCAGTGATGATGCTCTCAATGACCTCCTTGCTTGCGCGGTTGTTC---AGATGGGAGT 1020271 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 || || | || | ||| || |||||||| ||| ||| | ||||||||| | Sbjct 1020272 GGAGTAGGCAAGCGAAGTCAGTGTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGA 1020331 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAAT 10333 | ||||| ||||| || || || || || ||||||||| Sbjct 1020332 AGGTGAGACCAGGCATCAGACCACGCTTCTTCAACCAGAAAAT 1020374 >seq41 Length=362133 Score = 123 bits (136), Expect = 5e-23 Identities = 671/1047 (64%), Gaps = 62/1047 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | |||||| |||||| |||||| ||||| ||| |||||| Sbjct 254809 CGCCATTGGATGTACTCGGAGGGGGTGCTGTCCAAGTGGTTATCAATGTGGGCGAAAGCG 254750 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 254749 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 254690 Query 225101 -TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||||| || || ||||| || ||| |||| || ||||| ||||| ||||| Sbjct 254689 ATGAGC-TCACCGGTAAGAACGTTGATCAGAGTACTCTTACCGGCACCGTTGGGACCAAT 254631 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGG 225217 ||| |||| ||||| || | ||| ||| || | | || | |||||| ||| Sbjct 254630 GACGGCAATACGGGAACCGAGAGAGCA--CTGGAAGGTGATGTCGG---AGATCTG-GGG 254577 Query 225218 CC---AGTTT----GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACG 225264 | || | |||| |||| || | |||| || ||||| Sbjct 254576 CTTGGAGGTACCGGGGTACTGGAAGGACATCTTGGTGGCACGGAGA------ATGGCCTT 254523 Query 225265 GTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGC 225324 | |||||| | | |||||| ||||| |||||||| ||||| ||| | || | | Sbjct 254522 GGCCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGA 254463 Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAG 225381 | | || |||||||| || ||| || ||||| ||||| ||| ||| Sbjct 254462 GGCACCGAGCTCGTAGTAGGACCTAGCGGAAGGAACACGCTTG---ACGAACTCAGCCAG 254406 Query 225382 GTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACA 225440 ||| || || | ||||||||| | || |||| || || || ||| | ||| | Sbjct 254405 GTTACCCTTGTAACGCTTGAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGA 254350 Query 225441 CTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCC 225499 | ||| ||||||| |||||||||||| || |||||||| | || | | || Sbjct 254349 CGTTGTCGAGGAAGCTAGAGTCGTGGGAGACGATGATGGAGGTGCAAG---GGGAGTTGA 254293 Query 225500 TTGAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTC 225558 | ||||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| Sbjct 254292 T-GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTC 254235 Query 225559 CAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCA 225618 |||||||||||| |||| | | || || ||| || | || |||||||| ||||| Sbjct 254234 CAGAAGCAGGATATCAGGAGCCTCGAAGACGGCACGGCACAAAGCAAGCTTCATCTTCCA 254175 Query 225619 GCCCCCGGACAGGGAGCCGATTGAAACAG---AGTGCTTAGCT--TCGTCAAAGCCGTAC 225673 || ||||| || ||| || || | |||| | | || ||| |||||| | Sbjct 254174 ACCACCGGAAAG--AGCGGA---AATCTCGCCAGTGATCATCTGCTCGGTGAAGCCGAAA 254120 Query 225674 TCCAGGAGCGTCTGGATAATG-CG--CTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCG 225730 || ||| || || | | || || || | | || | | || | | | | | Sbjct 254119 TCGGTAAGCTGCTTGACGACGTCGTCCTGGGTGGTGGTGACACCAGCCTCCTCGAGCTTC 254060 Query 225731 GACGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACG 225790 | | | || |||||| || | ||| | ||| | |||||| || ||| Sbjct 254059 TTCATGGTCCACTCGATGGTGGTCATCTCGGTATCAGCAGAGTCCAGGTCGTGCTCGACG 254000 Query 225791 TACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGC 225849 | || ||| || | | || | |||||| ||||| | ||| | || || || Sbjct 253999 AAGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTTGTTGATGGC 253941 Query 225850 ACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCG 225909 ||| | ||| ||| ||| || | |||||||||||| || ||||| | | || || Sbjct 253940 ACGCATCAGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACG 253881 Query 225910 CTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTC 225969 ||||| ||| | || |||||| || |||||| |||| |||||||||||||| Sbjct 253880 CTTGAGACGGAGATGGGTCTGGTTCAGCAGAATCTTGGCACCGTAGGCAAGGGAGAAGGT 253821 Query 225970 GCAATCGCACAGGTCCTCACCCTCCTC 225996 ||| | |||||| ||||| |||||||| Sbjct 253820 GCAGTTGCACAGATCCTCGCCCTCCTC 253794 >seq8 Length=1355664 Score = 89.7 bits (98), Expect = 9e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| || |||||| || |||| ||||| |||||||||||||| ||||||| |||| Sbjct 459880 AGCCAAGCAACGTTGGCAACATCCAGATGGTTAGTAGGTTCGTCCAGGAGCAGGACGTCA 459821 Query 225575 GCATCAATG-AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || || | || || || | |||| |||||||| ||||| || ||||| ||||| Sbjct 459820 GC-TCGTTGCAACATAGCTCGGGCCAGAGCGAGCTTCATCTTCCAACCACCGGAGAGGGA 459762 Query 225634 GCC 225636 ||| Sbjct 459761 GCC 459759 >seq35 Length=391435 Score = 87.8 bits (96), Expect = 3e-12 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 275244 AGTATACGTCCTGGACGACAGCGATTCCCCGGA--CGTCAAGGAGCTCTCCGGGTTCTTT 275301 |||||||||| |||||||| | | || || | |||| |||||| || || | | Sbjct 209305 AGTATACGTCATGGACGACGGTAA--CCTCGAAAGCGTCCGTGAGCTCGCCAGGAAGTAT 209248 Query 275302 GGGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCG 275360 || ||||| |||| ||| || ||| ||||||||||| | |||| | || ||||| | Sbjct 209247 GG-TTTCATGTATCACGTCCGGGACGACCGGCCGCATCTCCGGAAGACAGGGAACCTGCT 209189 Query 275361 GTCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCC 275420 | |||||| |||| | || ||||||||||| ||||||||||| ||| | ||||| Sbjct 209188 ATGGAACTTTACTCGGACACATGGTGAATTCTTTGTAATCTTTGACGCGGACATTTGCCC 209129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921613333539640