Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq127 226 5e-54 seq9 205 2e-47 >seq127 Length=80722 Score = 226 bits (250), Expect = 5e-54 Identities = 881/1360 (65%), Gaps = 45/1360 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| |||||||| | ||| || || || ||||| |||| || || Sbjct 28500 GTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGGG 28441 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || || ||||||||| ||||| | || || || || ||||| || | ||| Sbjct 28440 CTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCAC 28381 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 ||||||||||| | | |||||| | ||| | || ||| | ||| ||||| Sbjct 28380 GAGCAGACTGTTGCGGATACCGTGCTCTTTGATCTGCTCTCGAAGCGTCTCCCACTCCCA 28321 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT-TGC 244328 | | | ||| || ||| ||||||||| ||||| || | |||| || Sbjct 28320 AAGGTCAGAGGGGG---------TGACATTCCACATGTCGAACTGAAGGATTCCCTCTGA 28270 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA-GCTC 244387 | |||| | |||| | ||||| |||||||||| | || || || || || | | Sbjct 28269 AGCTGGGGAT-CCCTTGAAGGTCTGGTAGGGACCTTGCTCCTTCGCGAG-TTCCATGGAC 28212 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT- 244446 || |||||||| | |||||| |||||||||||| ||| |||| | || |||| Sbjct 28211 TCAGTAAGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTCAGCTGACGAGCCTCA 28152 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | || | ||| || |||| || || ||| | || || || ||||| || || | Sbjct 28151 GGCG-ACTCGAAAGGCATGCGCAGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAG 28093 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 || ||||||| || ||| ||||| | || || || | | |||||||| ||||| Sbjct 28092 ACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGCCTCCTGA-ACGGGGTAGTAGTTGA 28034 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | ||||| | ||| ||||| || ||| | || || ||| ||| || | Sbjct 28033 CATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTGA 27974 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||| ||| | || ||||| || | ||| || | || || || | Sbjct 27973 AGTTGTA---GCAGC---CCTCGTCG----TAATCA--ACGTAGGCGGGCAGAGCCAGCG 27926 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||||||||||| || || ||||| || | | ||| | | |||||| ||||| | Sbjct 27925 AAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCAGTGCAAA 27866 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 | || || ||| || ||||||| || || ||| ||| |||||| || |||| Sbjct 27865 GATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCT 27806 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||| ||||||||||| || |||||| ||||| |||||| || ||| || | Sbjct 27805 TGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAGCT 27746 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | || || |||| ||| | ||||| || || ||| ||||||| Sbjct 27745 TCTGGGCACGGATCGTCTGACGACCACGACCCTCCTTTTCATACTTCTCGTATAGGGCCT 27686 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | ||||| ||| || || | ||||| |||||| |||||||||||| ||| Sbjct 27685 CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCC 27626 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | | || | || || | || ||||||||| || |||||||| || ||| |||| | Sbjct 27625 AGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCACAGAGCCAGGAACA 27566 Query 245046 GGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAA 245102 |||| | || | | | ||| ||| || ||| ||||| | || |||| ||| || | Sbjct 27565 GGTCTC--GTGCACGGATCTCTTCCTTTCC-GTGATTCTTTCGAAGGTCCAGAAACTCGA 27509 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 |||| || |||||||||||| | |||| ||| | ||| ||||| ||||||||||| | Sbjct 27508 AGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCGCTTGTTGCCAC 27449 Query 245163 CCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTT 245220 |||| | || ||| ||| | || | |||||| | ||||| | || | || || || Sbjct 27448 CCTGAT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGGATGATTCCATT 27391 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGA 245277 || ||||||||| || ||||| | ||| | || | || ||| | || Sbjct 27390 GGATGTGCCGTTGGTACCGGCAATGTACGAGCCTGTAGCACGAATGCGGTGAACGTTG-- 27333 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 | || | || || || ||| ||||| | ||| ||| |||||| || || || Sbjct 27332 -AGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 27274 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 || || |||||||| |||||| | || || ||||| || || ||||| | || ||| Sbjct 27273 ACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGCTGAGCCTGGGG 27214 Query 245398 GCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | | ||||| |||||||| || || |||||| Sbjct 27213 GGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAG 27174 >seq9 Length=1081052 Score = 205 bits (226), Expect = 2e-47 Identities = 367/525 (70%), Gaps = 27/525 (5%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 ||||| ||| |||||||| || ||||| | ||||||| || | | || | || Sbjct 1020500 CCCTGTATCCGCAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAG-GACAAGAAATCCAC 1020442 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| || | || || ||||| ||||||||||||||||||||||| || || || Sbjct 1020441 ATTCGCTCAGCGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTTT 1020382 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACG 42810 ||| || || |||||| | ||| || | ||| |||||| || ||||||||||| |||| Sbjct 1020381 CGCTTCTATTTTCTGGTTGAAGAAGCGTG-GTCTGATGCCTGGTCTCACCTTCTCCAACG 1020323 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || ||| | | |||||||| || || | ||||| || ||||| || ||| || Sbjct 1020322 AGCTGATCTCCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTC---CC 1020266 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC---CATCATCACGGAGGCCGTGG 42927 | || | |||| | | | | || |||| | ||||||||| || ||||| Sbjct 1020265 ATCTGA---ACAACCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCA 1020209 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 || |||||||||||| | || || | || || || || | ||||||||| | Sbjct 1020208 CCATTGAGAAGGAGTTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGCCA 1020149 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA 43047 |||| ||| |||||||| ||| || ||||||| ||| ||| | | |||| Sbjct 1020148 ACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTC------GCTCTCG 1020095 Query 43048 GC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCG-TTG 43100 || || | | ||||| || | |||||||||||| |||||||||||||| ||| Sbjct 1020094 GCAACGACAAGGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTG 1020035 Query 43101 GAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| ||| |||||||| |||||||||||||||| ||||||||| Sbjct 1020034 GAGG-CAAAACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAG 1019991 Score = 95.1 bits (104), Expect = 2e-14 Identities = 201/293 (69%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 |||||| |||||||||||| || || | || |||||| || ||||| || || || Sbjct 1020888 ATCTGGCAAATGTACAAGAAGCACGAAGCT-TCTTTCTGGACTGCTGAGGAAATCGATCT 1020830 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCA 42414 | ||||||| || |||| | | | || ||| || |||| | ||| || Sbjct 1020829 GTCCAAGGATCTCCACGACTGGCACACCC-GTATGAACGATGACGAGCGCTACTTCGTCT 1020771 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 || | || ||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 1020770 CTCACGTTCTTGCCTTCTTCGCTGCCTCTGATGGCATTGTCAATGAGAACCTGGTTGAGC 1020711 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| |||||| || ||||||||||| |||||||| | Sbjct 1020710 GCTTCAGCGCTGAGGTCCAGATTCCTGAGGCTCGTTGCTTCTACGGATTCCAGATTATGA 1020651 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATC 42584 | |||||| | ||||| ||| ||| || || |||| |||| |||||| Sbjct 1020650 TGGAGAACATCCACTCAGAGACCTACTCC---CTCCTCATTGACACATACATC 1020601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944329910063120