Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq87 131 4e-25 seq6 131 4e-25 seq9 98.7 2e-15 seq4 98.7 2e-15 >seq87 Length=157873 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || ||||||| | Sbjct 70651 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 70592 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||| ||||| || ||| Sbjct 70591 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 70532 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | ||| || || || Sbjct 70531 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 70472 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || ||||||||||| |||||||| Sbjct 70471 TCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 70425 >seq6 Length=1479970 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || || |||| ||| || || || || || ||||| Sbjct 795388 TGGCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 795447 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || |||||||| | || ||||| |||||||| |||||||| || | Sbjct 795448 GAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGA 795507 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| |||| ||||| || || || | || || || Sbjct 795508 GGGATACCCTCCTTATCCTGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCG 795567 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 795568 ACTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || || || | || || || ||||| Sbjct 795941 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAA 796000 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| |||||||| | || ||||| || || ||||| || |||| || || || Sbjct 796001 ATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGACATTG 796060 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || || ||||| ||||| ||||| || ||||||||| Sbjct 796061 TCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 796120 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 796121 AAAATCTGCAT 796131 >seq9 Length=1081052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 || || |||||| | ||| || | || || | ||| | || ||||| ||| | || Sbjct 1020203 GAGAAGGAGTTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTG 1020144 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGA 269230 ||||| || || ||||| || || || || ||| |||| | || ||||| | || | Sbjct 1020143 ATGAAGCAGTACATCGAGTTTGTTGCCGACCGT--CTTCTGGTCGCTCTCGGCAACGACA 1020086 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | |||||||| |||| || ||||||| ||| ||||| || || || | ||| || | Sbjct 1020085 AGGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAGGCAAAA 1020026 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA-ACGTCCTGGTGTAATG 269340 | ||||||||||| ||||| ||| | ||||| || | | || ||||| ||| Sbjct 1020025 CCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAGGCC-GGTGTCATG 1019976 >seq4 Length=1629322 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||| ||||| || || || | || || || ||||||||| Sbjct 925070 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 925011 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 ||||||||||| | || ||||| || || ||||| || || | || || || || Sbjct 925010 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 924951 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 924950 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642505028586