Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 114 3e-20 seq41 84.2 5e-11 >seq9 Length=1081052 Score = 114 bits (126), Expect = 3e-20 Identities = 139/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||| | | || ||| ||||||||||| || || |||||||| || | || Sbjct 1020161 GGCATGAACGCCAACCTGATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTC 1020102 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || || || | || || |||||||| || | |||||||| | ||| |||||| ||| Sbjct 1020101 GCTCTCGGCAACGACAAGGTGTACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATC 1020042 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGG 243746 || ||| ||| ||||| ||||||||||| ||||| ||| |||| || || | | || || Sbjct 1020041 TCCCTTGGAGGCAAAACCAACTTCTTCGAGAAGCGCGTCGGTGACTACCAGAAGGCC-GG 1019983 Query 243747 TGTGATG 243753 ||| ||| Sbjct 1019982 TGTCATG 1019976 >seq41 Length=362133 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || | ||| |||| || || ||||||||||| || || || | || Sbjct 253973 GGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATCAGAGTAGACTTTCCGGAACC 253914 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || || ||||||||||| | |||||||| ||| || | || | |||||| Sbjct 253913 GTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGGAGATGGGTCTGGTTCAG 253854 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || || || || || || | ||||||||||| || Sbjct 253853 CAGAATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCACAGATCCTCGCC 253800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102868879178450