Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq127 190 2e-43 >seq127 Length=80722 Score = 190 bits (210), Expect = 2e-43 Identities = 952/1490 (64%), Gaps = 60/1490 (4%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || || ||||| || || ||||| | | ||| | || || || ||||| || || Sbjct 27190 CCCACTCTATTCAATGCCGGTACCCCCCAGGCTCAGCTCTCATCATGCTTCCT--TGTCG 27247 Query 93958 AAC--AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| ||| ||| ||| || | ||| | |||||| |||||| | |||| Sbjct 27248 ATATGAAGGATGACAGCATTGACGGTATCTACGATACTCTCAAGACCTGTGCCATGATCT 27307 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 |||| || || || ||||| ||| || ||| | | ||||| | || || |||| Sbjct 27308 CAAAGATGGCAGGAGGTATCGGTCTCAACGTTCACCGCATTCGTGCTACAGGCTCGTACA 27367 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | ||||||||| ||||| ||||| || || |||| ||||| || || ||||||||| Sbjct 27368 TTGCCGGTACCAACGGCACATCCAATGGAATCATCCCCATGCTGCGAGTGTTCAACAACA 27427 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || | || || || |||||||| | | | ||| | || || ||||||||| Sbjct 27428 CTGCCAGATATGTTGATCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCTATCTATCTCG 27487 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 ||||||||||| | || || | || | ||||| |||||||| ||||| || || Sbjct 27488 AGCCCTGGCACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACGGAAAGGA-- 27545 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 |||| | || ||||||| ||| ||||| ||| | || || || || ||||| | Sbjct 27546 -AGAGATCCGTGCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTCATGAAGC 27604 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 |||| ||||| ||| ||||| ||| | || || || || || || || ||| | | Sbjct 27605 GCGTTGAGAAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGCCTGGCTG 27664 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 || | || | ||||| | | | || | || ||| | |||| | || | Sbjct 27665 ACTGCTACGGCGAGGAGTTTGAGGCCCTATACGAGAAGTATGAAAAGGAGGGTCGTGGTC 27724 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || ||| |||||||||| | |||| | || | || ||||| Sbjct 27725 -GTCAGACGATCCGTGCCCAGAAGCTGTGGTACTCGATCCTCGAAGCCCAAACCGAGACT 27783 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| || |||| ||| ||||||| || |||| Sbjct 27784 GGTAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACCAGAAGAACCTG 27843 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT--TCTCCGGACG 94609 || ||| ||||| ||||| ||||| |||||| | || ||||| |||| || | Sbjct 27844 GGTACTATCCGCAGCTCCAATCTTTGCACTGAGATTATTGA--ATACTGCGCTCCCGATG 27901 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || ||||||| || ||||||| || | ||| || | | ||| ||| | Sbjct 27902 AGGTTGCTGTTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGT---TGAT-----TA 27953 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTT-CGCGGGAAGGATGGTCTT 94727 || | | ||| | | | | | || |||| ||| || | |||| || || Sbjct 27954 CGACGAGGGCTGC-TACAACTTCAAGAAGCTCCACGAAGTTACACGGG--TTATCGTGCG 28010 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||||||| | | ||||| |||| ||||||||| | |||||| ||| || Sbjct 28011 TAACCTGAACCGTATCATCGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAA 28070 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | || ||||| ||||| || | || || |||||| | || || || | || | Sbjct 28071 CATGCGTCATCGACCCATTGGTCTTGGTGTTCAGGGTCTTGCAGATGCATTCTTGGCTCT 28130 Query 94848 GCGTCTGCCCTACGACTCTGTCGAC-GCGGCGGGT---TTGAATTTGAACATATTCGAAA 94903 ||| |||| | ||| |||| | | ||| || ||||| | | || ||||| | Sbjct 28131 GCGCATGCCTTTCGA----GTCGCCTGAGGCTCGTCAGCTGAATAAGCAGATCTTCGAGA 28186 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 || || | | ||| | | | ||| | | | || | ||| || || Sbjct 28187 CAATCTACCATGCCGCCCTTACTGAGTCCATGGAACTCGCGA---AGGAGCAAGGTCCCT 28243 Query 94964 ACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 || | | ||| ||||| || ||| | |||| || ||||||||||| | ||| Sbjct 28244 ACCAGACCTTCAAGGGATCCCCAGCTT--CAGAGGGAATCCTTCAGTTCGACATGTGGAA 28301 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA---CA 95078 ||| | ||||| | || | || ||||| | || || || |||||| || Sbjct 28302 TGTCACCCCCTCTGACCTTTGGGAGTGGGAGACGCTTCG---AGAGCAGATCAAAGAGCA 28358 Query 95079 CGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCT 95138 |||| | ||| ||||| ||||| || |||||||| ||| || | |||||| | Sbjct 28359 CGGTATCCGCAACAGTCTGCTCGTGGCTCCTATGCCCACAGCCAGTACCTCTCAGATCTT 28418 Query 95139 TGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGC 95198 |||||||| || | ||||| |||| ||| |||||| | ||| | | || || || || Sbjct 28419 GGGCAACAATGAATGCTTCGAGCCCTACACATCCAACATCTACTCCCGACGTGTTCTGGC 28478 Query 95199 CGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGA-CCTGACGTCTCTGGGTGTGT 95257 || || |||| ||| ||||| ||| || || | || | | |||| ||| Sbjct 28479 TGGAGAGTTCCAGGTCGTCAACCCCTGGCTCTTAAAAGATCTTGTTGAGT-TGGGCTTGT 28537 Query 95258 GG---GGTGACAAGGTCAAGAACC-AACTGCTACGCGCCAACGGCTCCGTCCAGAACATC 95313 || | || || | ||||||| || | | | ||| || || |||| |||||| Sbjct 28538 GGTCCGATGCCA---TGAAGAACCGAATTATTGCTGAACAA-GGTTCGATCCAAAACATC 28593 Query 95314 CCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 || | || || || ||| ||||||| |||||||||||||| |||||||| Sbjct 28594 CCCAACATCCCTGATGACCTCAAGGCCCTCTACAAGACCGTCTGGGAGAT 28643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494718333160520