Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq87 98.7 1e-15 seq127 89.7 5e-13 seq6 86.0 6e-12 >seq9 Length=1081052 Score = 114 bits (126), Expect = 1e-20 Identities = 335/506 (66%), Gaps = 15/506 (3%) Strand=Plus/Minus Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397 ||||| ||||| |||||||||| |||||| || | | | |||| | || || Sbjct 1020491 CGCAAGAAGGCCGAGTGGGCAATTCGCTGGATCCAGGACAAGAAATCCACATTCGCTCAG 1020432 Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT-GCCGCCAT 52456 || | || ||||||||| ||||||||| | || || || ||||| || | || Sbjct 1020431 CGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGT-GCTTTCGCTTCTAT 1020373 Query 52457 CTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATC 52516 || | | || | | || | ||||| || || || ||| ||||||| |||| || Sbjct 1020372 TTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTC 1020313 Query 52517 GCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGA 52576 || ||||| || || ||||| ||||| || ||||| ||| || | | | | | || Sbjct 1020312 CCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCT--ACTCCA---CTCCCAT--CTGA 1020260 Query 52577 AAAATTGG--ATTC--GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAA 52632 | || | | | ||| || |||||| ||| || || || | || || | Sbjct 1020259 ACAACCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGA 1020200 Query 52633 AGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGT 52692 ||||||| || || | || || || || |||||||||||||||| | ||| Sbjct 1020199 AGGAGTTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTGATGA 1020140 Query 52693 GCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTAC 52751 |||||||||||||||| || || ||||| |||| ||||| | | ||| || Sbjct 1020139 AGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTCGCTCTCGGCAACGACAAGGTG- 1020081 Query 52752 TTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAAC 52811 | ||| | ||| || || || || ||| | ||||| || |||| ||||| |||||| Sbjct 1020080 TACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAGGCAAAACCAAC 1020021 Query 52812 TTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || ||||||||||| ||||| || || Sbjct 1020020 TTCTTCGAGAAGCGCGTCGGTGACTA 1019995 >seq87 Length=157873 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 70618 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 70559 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 70558 AAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 70499 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || || || || || || || Sbjct 70498 TTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTG 70439 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 70438 ACGAAAATCTGCAT 70425 >seq127 Length=80722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 |||| || | ||| ||||| || || ||||| || || ||| | |||||| | || Sbjct 27845 CCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTA 27786 Query 153744 CCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGC 153803 || |||||| ||| | ||||| ||| | ||| | ||| || || | | ||| Sbjct 27785 CCAGTCTCGGTTTGGGCTTCGAGGATCGAGTACCACAGCTTCTGGGCACGGATCGTCTGA 27726 Query 153804 CGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAG 153863 ||| || ||||| | || || |||||| || ||||||||| |||||||||||| Sbjct 27725 CGACCACGACCCTCCTTTTCATACTTCTCGTATAGGGCCTCAAACTCCTCGCCGTAGCAG 27666 Query 153864 TCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACG 153923 || || ||||| || |||| | || ||||| || | ||| | |||| | ||| Sbjct 27665 TCAGCCAGGCCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACG 27606 Query 153924 CGTCGCATGAACAGATCCGGCACCCAGAGCGC 153955 || |||||| ||||| || | ||| || || Sbjct 27605 CGCTTCATGAAGAGATCAGGGATCCACAGAGC 27574 >seq6 Length=1479970 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | ||| | || | | | |||||||| |||||||||||||| Sbjct 795390 GCCGCCACGGAGACGGAGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 795449 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| || || || || || | |||| |||||||| ||||| ||||| Sbjct 795450 AAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 795509 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || || | |||| || | ||||| | ||||| | Sbjct 795510 GATACCCTCCTTATCCTGGATCTTCGACTTCACATTG-TCAATCGTGTCCGATGACTCGA 795568 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || || || || || || ||||||||||| Sbjct 795569 CTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAAATCTGCAT 795617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257518018640