Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09]
787 sequences; 55,184,262 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq6 84.2 2e-11
seq87 82.4 7e-11
>seq6
Length=1479970
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || ||| || ||| ||| ||
Sbjct 795923 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 795982
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || ||| | |||| || || ||||| || ||||| || || || || |||
Sbjct 795983 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGA 796042
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || |||| || | ||| || ||||||||||| || ||||| | || |||
Sbjct 796043 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTG 796102
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || || || ||||| |||||
Sbjct 796103 CCGGTGAGGGTCTTGACGAAAATCTGCAT 796131
>seq87
Length=157873
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/212 (69%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| || || || || || ||||| ||||| || || ||| || ||| || ||
Sbjct 70634 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 70575
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| || || || ||| | |||| || |||||||| || || ||||| || || || ||
Sbjct 70574 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 70515
Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
|| || |||| || | || | ||||||||||||||| || ||||| || | || |
Sbjct 70514 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCT 70456
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || || || || || || ||||| ||||||
Sbjct 70455 TCCCCGTGAGGGTCTTGACGAAAATCTGCATC 70424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451998753418520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |