Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq127 185 1e-41 seq9 118 1e-21 >seq127 Length=80722 Score = 185 bits (204), Expect = 1e-41 Identities = 1119/1772 (63%), Gaps = 35/1772 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| || ||| |||| | || || |||||||| || |||||||| | Sbjct 28837 TGAACTGAATAGGGGCCGCAGCAGCCTGAGTACGAAGATAGTACATGCCAGTCTTGAGTC 28778 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || |||||| || | ||||| || | |||| | || ||| | ||| Sbjct 28777 CCAATTTCCAGCCAGCAAAGTGCATACTGGTAATCTTGCCCATTGAGGGATCCTTCATAT 28718 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||| | | ||| ||||| || ||||| || ||||| || ||||| | || Sbjct 28717 GGATGTTGAGAGATTGAGATTGGTCAATGAAAGCACCTCGATCGGCGGCCATCTG---CA 28661 Query 115706 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || | || | |||| | ||||| || || |||||||| ||| | ||||| ||| Sbjct 28660 CAAC-TTGACGTTGAGAAATCTCCCAGACGGTCTTGTAGAGGGCCTTGAGGTCATCAGGG 28602 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTT 115821 || | ||| |||||||| || || | | | || | | |||||| | | Sbjct 28601 ATGTTGGGGATGTTTTGGATCGAACCTTGTTCAGCAATAATTCGGTTCTTCATGGCATCG 28542 Query 115822 GACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCA 115881 ||||| | || | || ||||| | | ||| ||||| || ||||| Sbjct 28541 GACCACAAGCCCAACTCAACAAGATCTTTTAAGAGCCAGGGGTTGACGACCTGGAACTCT 28482 Query 115882 CCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 115941 || || || |||| |||||||||| ||||| ||||| ||||| |||||||| Sbjct 28481 CCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGGGCTCGAAGCATTCATTGTTG 28422 Query 115942 CCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001 |||||||| || | || |||||||||||| || |||| ||| || |||||||||| | Sbjct 28421 CCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCACGAGCAGACTGTTGCGGATA 28362 Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCC 116059 || | | | || | || || | ||||| | | || | || | Sbjct 28361 CCGTGCTCTTTGATCTGCTCTCGAAGCGTCTCCCACTCCCAAAGGTCAG--AGGGGGTGA 28304 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | | |||||| || ||||| ||||| || | || ||||| ||||||| || |||| | Sbjct 28303 CATTCCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTGGT 28244 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 | || || | ||| ||| | ||| | | | ||||| || || || ||||||| Sbjct 28243 AGGGACCTTGCTCCTTCGCGAGTTCCATGGACTCAGTAAGGGCGGCATGGTAGATTGTCT 28184 Query 116180 CAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACA-A 116237 | || || | ||||| || | ||||| || || || | | | ||| | Sbjct 28183 CGAAGATCTGCTTATTCAGCTGAC-GAGCCTCAGGCGACTCGAAAGGCATGC-GCAGAGC 28126 Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 | ||| |||| || ||||| || ||||| || ||||| || ||||| | ||| || Sbjct 28125 CAAGAATGCATCTGCAAGACCCTGAACACCAAGACCAATGGGTCGATGACGCATGTTGCT 28066 Query 116298 CTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 || || || || ||||| || | || |||||| | | || || || Sbjct 28065 GTTGCGTGCCTCCTGAACGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTACGCAC 28006 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 || |||| ||| | ||| || ||||| | | | | | | || || | || || Sbjct 28005 GATAACCCGTGTAACTTCGTGGAGCTTCTTGAAGTTGTAGCAGCCCTCGTCGTAATCAAC 27946 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 || || || || | || ||||| || || |||| |||||| | | ||| Sbjct 27945 GTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTA 27886 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 || ||||| || || || | ||| || || || || |||| |||||| || || Sbjct 27885 TTCAATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCT 27826 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 ||| ||| || ||||||||||| ||||| | || | || ||||| ||||||| | Sbjct 27825 CTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTC 27766 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAG--TGGCGTTGGCTCGCCCCTCCTC 116654 ||| || | | ||| | | || | ||| | | | || || | || ||||||| Sbjct 27765 GAGGATCGAGTACCACAGCTTCTG-GGCACGGATCGTCTGACG--ACCACGACCCTCCTT 27709 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTG 116713 || ||||| ||| |||||||||||||| || || ||| || | || || || Sbjct 27708 TTCATACTTCTCGTATAGGGCCTCAAACTCCTC-GCCGTAGCAGTCAGCCAGGCCAGGGC 27650 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || | || || | ||||| ||| | | || |||||| |||||||||||||| | Sbjct 27649 ACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGAT 27590 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCG-ACAGCGAGCTTCTTCATCCCCCTGATTG 116832 | |||||||| || ||| ||| || || || || || | ||||| | || ||||| Sbjct 27589 CAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATC-TCTTCCTTTCCGTGATTC 27531 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 || | |||| ||| || | || ||| | |||||| || || || || | || | Sbjct 27530 TTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAG 27471 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 | || ||| ||| |||| | ||||| || || || ||| || || || Sbjct 27470 GCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAACACTCGC 27411 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGG 117007 ||||| || ||||| |||| ||| ||| || || || || |||||| || | | Sbjct 27410 AGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT--GTAG 27353 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | | ||| | || | ||| ||||| |||||| ||||||||| || || Sbjct 27352 CACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATGGCACAGG 27293 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | ||||| | ||||||| || || || |||| |||| | ||| |||||||| Sbjct 27292 TCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATG 27233 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 || | || | | || ||||| || ||||| || || || | || || | || | Sbjct 27232 ATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAGA 27173 Query 117188 TACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 || | | |||||| | | ||||||||| | |||| ||||| || || |||| Sbjct 27172 -ACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCCAAATA 27114 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || | || || ||||| | ||||| ||| || Sbjct 27113 CCCACAGAAACACGCATGATCATGTGTTGTGG 27082 >seq9 Length=1081052 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| |||||||||||||||||||| || || || |||||| ||||| ||||| ||||| Sbjct 1020294 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 1020353 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||||||||||||| | | || | ||| ||||||||| ||||| || Sbjct 1020354 ACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGC 1020413 Query 127651 CGCGAACGCAAATAGACGCT 127670 ||||| |||| ||||||| Sbjct 1020414 GGCGAAGGCAACAAGACGCT 1020433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501164622920