Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 129 1e-24 seq87 120 7e-22 seq4 102 2e-16 >seq6 Length=1479970 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| || | ||||||||||| | || | || ||| Sbjct 795406 AGAACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCT 795465 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||||||||||||||||||||| ||| || || || ||| Sbjct 795466 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 795525 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||||| | || || || |||| ||||| ||| Sbjct 795526 TGGATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTC 795585 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| || Sbjct 795586 TTTCCGGTGAGGGTCTTGACGAAAATCTG 795614 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| | | || Sbjct 795911 CGAAGGCGGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 795970 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||| || || ||||| ||||| ||| |||||| Sbjct 795971 CGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCCC 796030 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||| || | | || || || | Sbjct 796031 TCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGA 796090 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || ||||| || Sbjct 796091 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTG 796128 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 795634 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 795693 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || ||||| ||||| ||| ||| || || ||| Sbjct 795694 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 795753 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | ||| || || | ||||| ||| Sbjct 795754 TGAATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTC 795813 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 795814 TTGCCGGTGAGGGTCTTGAC 795833 >seq87 Length=157873 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||||| |||| ||||||||| | | || | || || Sbjct 70636 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 70577 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || || || || ||| Sbjct 70576 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 70517 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 70516 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 70457 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || ||||| || Sbjct 70456 TTCCCCGTGAGGGTCTTGACGAAAATCTG 70428 >seq4 Length=1629322 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 925072 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 925013 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||| ||||| || |||||| || ||||||||||| ||| || | Sbjct 925012 TCAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 924953 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | |||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 924952 CAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 924893 Query 199620 A 199620 | Sbjct 924892 A 924892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178909712417729