Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq87 152 6e-32 seq4 113 5e-20 seq6 107 2e-18 >seq87 Length=157873 Score = 152 bits (168), Expect = 6e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 70616 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 70557 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 70556 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 70498 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 70497 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGA 70438 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 70437 CGAAAATCTGCATCTTGC 70420 >seq4 Length=1629322 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| | Sbjct 925072 CCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 925013 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | | |||||||||| ||||| ||||| | Sbjct 925012 TCAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 924953 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | |||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 924952 CAATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 924893 Query 46584 AG 46585 || Sbjct 924892 AG 924891 >seq6 Length=1479970 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| || ||||| | || || Sbjct 795923 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 795982 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| |||||| ||||| | || | | |||||||||| Sbjct 795983 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGA 796042 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| | | | || || || || || || | |||||||| ||| Sbjct 796043 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTG 796102 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| Sbjct 796103 CCGGTGAGGGTCTTGACGAAAATCTGCAT 796131 Score = 105 bits (116), Expect = 8e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| | || || ||||||||||| || || Sbjct 795655 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 795714 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||| ||||||| || | | |||||||||| |||||| ||| | ||| Sbjct 795715 ATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTT-AACGTT 795773 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||||| || || | |||||||| ||||| || || || || || Sbjct 795774 GTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 795833 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 795426 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTCAAGCTGCTTTCCAGCGAA 795485 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||| ||| ||||||| ||| | | Sbjct 795486 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTCGACTTCACATT 795545 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || |||| ||||| || || || || || || || || Sbjct 795546 GTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTTTCCGGTGAGGGTCTTGAC 795605 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 795606 GAAAATCTGCAT 795617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232839467240