Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq87 136 4e-27 seq9 132 5e-26 seq4 123 2e-23 >seq6 Length=1479970 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| |||| ||||| | | |||| | | Sbjct 795835 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCG 795776 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| |||| || || | ||||| ||||| ||||| ||||||||||||| || Sbjct 795775 ACAACG-TTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTG 795717 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 795716 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 795657 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || || |||||||| ||| || | || || Sbjct 795656 GAATCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 795619 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | | Sbjct 796131 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 796072 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||||||||| | |||||| Sbjct 796071 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 796012 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 796011 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 795952 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 795951 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCG 795917 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || ||||| | || |||||| | | Sbjct 795617 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACTATCACACTGGAAGTCGAGTCATCG 795558 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || |||| || || ||||| || || | ||||| Sbjct 795557 GACACGATTGACAATG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 795499 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || ||||| |||||||| Sbjct 795498 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAA 795439 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| | || || || |||| || ||| | | ||||||| Sbjct 795438 CATTCAGAAGGAGTCCACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCC 795389 >seq87 Length=157873 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| |||| || ||| | Sbjct 70422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 70481 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 70482 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 70540 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 70541 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 70600 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || | ||||| || || | || ||| Sbjct 70601 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGGC 70652 >seq9 Length=1081052 Score = 132 bits (146), Expect = 5e-26 Identities = 333/486 (69%), Gaps = 20/486 (4%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAA-ATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || ||||| || ||||||| | ||| | ||| || || |||||||| Sbjct 1020010 TTCTCGAAGAAGTTGGTTTTGCC-TCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 1020068 Query 132684 GGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | ||||| |||| |||||| || |||| || || | |||||| || || Sbjct 1020069 GGTCGACTTGTACACCTTGTCGTTGCCGAG-AG--CGACCAGAAGACGGTCGGCAACAAA 1020125 Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCA-GACGCACCGGCAGCGCT 132798 ||||||||| ||| ||| | || || | | | ||||||| | |||| || || || Sbjct 1020126 CTCGATGTACTGCTTCATCAGGTTGGCGTTCATG-CCCAGCATGGCGCAA-GGAAGGGCC 1020183 Query 132799 TCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857 || || | ||| | || ||| |||| ||| ||||| |||| ||| | || | | | Sbjct 1020184 TCAGTCAAGAACTCCTT-CTCAATGGTGACGGCGTCAGTGATGATGCTCTCAATGACCTC 1020242 Query 132858 CGCGCTCG-GCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916 | ||| | || |||| | | ||| | | | |||||| ||||| || | | Sbjct 1020243 CTTGCTTGCGCGGTTGTTC-AGATGGGAGTGGAGTAGGCAAGCGAAGTCAGTGTGAAGAC 1020301 Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | ||| || || |||||| ||| || | || ||||| || || || || | Sbjct 1020302 CCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCT 1020361 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || || | |||||| || ||||||| |||||||||||| ||||| | Sbjct 1020362 TCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGCGGCGAAGG 1020421 Query 133037 CCACCAGGCGCTCGCCGAACGTGG-CTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTC 133094 | || || |||| |||| |||| ||||| | ||| ||||||||| | ||||| || Sbjct 1020422 CAACAAGACGCTGAGCGAATGTGGATTTCTTGTCCTG--GATCCAGCGAATTGCCCACTC 1020479 Query 133095 GGCCTT 133100 |||||| Sbjct 1020480 GGCCTT 1020485 Score = 122 bits (134), Expect = 9e-23 Identities = 195/277 (70%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||| |||||| || || | || ||||| | ||||||||| || || || Sbjct 1020604 GTATGTGTCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTTCTCCATCATAATCTGGAA 1020663 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||||| ||||| || ||||| | ||| || || | || ||| ||||| ||||| | Sbjct 1020664 TCCGTAGAAGCAACGAGCCTCAGGAATCTGGACCTCA-GCGCTGAAGCGCTCAACCAGGT 1020722 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | || ||||| ||||| || ||| ||||| ||||| || ||||| || ||| | || Sbjct 1020723 TCTCATTGACAATGCCATCAGAGGCAGCGAAGAAGGCAAGAACGTGAGAGACGAAGTAGC 1020782 Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 |||||| ||||||| || | ||||||| | ||||||||||| || | |||| Sbjct 1020783 GCTCGTCATCGTTCATACGGGTGTGCCAGTCGTGGAGATCCTTGGACAGATCGATTTCCT 1020842 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||| || |||||||| Sbjct 1020843 CAGCAGTCCAGAAAGAAGCTTCGTGCTTCTTGTACAT 1020879 >seq4 Length=1629322 Score = 123 bits (136), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | | Sbjct 924892 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 924951 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || || | ||||| |||||||||||| | ||||||||||| || Sbjct 924952 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTG 925011 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| |||||||||||||| ||| Sbjct 925012 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAAG 925071 Query 38433 G 38433 | Sbjct 925072 G 925072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167879550080