Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09]
787 sequences; 55,184,262 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 1e-27
seq87 136 4e-27
seq9 132 5e-26
seq4 123 2e-23
>seq6
Length=1479970
Score = 138 bits (152), Expect = 1e-27
Identities = 163/218 (75%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| |||| ||||| | | |||| | |
Sbjct 795835 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAATCTTCTGACACCATCG 795776
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| |||| || || | ||||| ||||| ||||| ||||||||||||| ||
Sbjct 795775 ACAACG-TTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTG 795717
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| ||||| || || | ||||||||| ||||||||||||||| |||
Sbjct 795716 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 795657
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || || |||||||| ||| || | || ||
Sbjct 795656 GAATCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 795619
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| | || |||||| | |
Sbjct 796131 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCT 796072
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||||||||| | ||||||
Sbjct 796071 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAA 796012
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| || || ||||| || || | ||||||||| ||||||||||
Sbjct 796011 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 795952
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| || ||
Sbjct 795951 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTCCG 795917
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || || ||||| | || |||||| | |
Sbjct 795617 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACTATCACACTGGAAGTCGAGTCATCG 795558
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | || || |||| || || ||||| || || | |||||
Sbjct 795557 GACACGATTGACAATG-TGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 795499
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| || || ||||| || |||| || ||||| ||||||||
Sbjct 795498 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAAGACGGCCGTACCCTTTCTGACTACAA 795439
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||| || ||||| | || || || |||| || ||| | | |||||||
Sbjct 795438 CATTCAGAAGGAGTCCACCCTTCACCTGGTTCTCCGTCTCCGTGGCGGCC 795389
>seq87
Length=157873
Score = 136 bits (150), Expect = 4e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| |||| || ||| |
Sbjct 70422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 70481
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| ||||
Sbjct 70482 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 70540
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | ||| ||||| ||||| || |||| ||||||||| ||||||
Sbjct 70541 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 70600
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||||| ||||| | || || || | ||||| || || | || |||
Sbjct 70601 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTGCGTGGTGGC 70652
>seq9
Length=1081052
Score = 132 bits (146), Expect = 5e-26
Identities = 333/486 (69%), Gaps = 20/486 (4%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAA-ATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| || || || ||||| || ||||||| | ||| | ||| || || ||||||||
Sbjct 1020010 TTCTCGAAGAAGTTGGTTTTGCC-TCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 1020068
Query 132684 GGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740
|| | ||||| |||| |||||| || |||| || || | |||||| || ||
Sbjct 1020069 GGTCGACTTGTACACCTTGTCGTTGCCGAG-AG--CGACCAGAAGACGGTCGGCAACAAA 1020125
Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCA-GACGCACCGGCAGCGCT 132798
||||||||| ||| ||| | || || | | | ||||||| | |||| || || ||
Sbjct 1020126 CTCGATGTACTGCTTCATCAGGTTGGCGTTCATG-CCCAGCATGGCGCAA-GGAAGGGCC 1020183
Query 132799 TCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857
|| || | ||| | || ||| |||| ||| ||||| |||| ||| | || | | |
Sbjct 1020184 TCAGTCAAGAACTCCTT-CTCAATGGTGACGGCGTCAGTGATGATGCTCTCAATGACCTC 1020242
Query 132858 CGCGCTCG-GCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGC 132916
| ||| | || |||| | | ||| | | | |||||| ||||| || | |
Sbjct 1020243 CTTGCTTGCGCGGTTGTTC-AGATGGGAGTGGAGTAGGCAAGCGAAGTCAGTGTGAAGAC 1020301
Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976
||||||| | ||| || || |||||| ||| || | || ||||| || || || || |
Sbjct 1020302 CCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACCACGCTTCT 1020361
Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036
| | ||| || || | |||||| || ||||||| |||||||||||| ||||| |
Sbjct 1020362 TCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGCGGCGAAGG 1020421
Query 133037 CCACCAGGCGCTCGCCGAACGTGG-CTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTC 133094
| || || |||| |||| |||| ||||| | ||| ||||||||| | ||||| ||
Sbjct 1020422 CAACAAGACGCTGAGCGAATGTGGATTTCTTGTCCTG--GATCCAGCGAATTGCCCACTC 1020479
Query 133095 GGCCTT 133100
||||||
Sbjct 1020480 GGCCTT 1020485
Score = 122 bits (134), Expect = 9e-23
Identities = 195/277 (70%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||| |||||| || || | || ||||| | ||||||||| || || ||
Sbjct 1020604 GTATGTGTCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTTCTCCATCATAATCTGGAA 1020663
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285
||||| ||||| || ||||| | ||| || || | || ||| ||||| ||||| |
Sbjct 1020664 TCCGTAGAAGCAACGAGCCTCAGGAATCTGGACCTCA-GCGCTGAAGCGCTCAACCAGGT 1020722
Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345
| || ||||| ||||| || ||| ||||| ||||| || ||||| || ||| | ||
Sbjct 1020723 TCTCATTGACAATGCCATCAGAGGCAGCGAAGAAGGCAAGAACGTGAGAGACGAAGTAGC 1020782
Query 133346 GCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
|||||| ||||||| || | ||||||| | ||||||||||| || | ||||
Sbjct 1020783 GCTCGTCATCGTTCATACGGGTGTGCCAGTCGTGGAGATCCTTGGACAGATCGATTTCCT 1020842
Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| | ||||| || || || ||| || ||||||||
Sbjct 1020843 CAGCAGTCCAGAAAGAAGCTTCGTGCTTCTTGTACAT 1020879
>seq4
Length=1629322
Score = 123 bits (136), Expect = 2e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || |||||| | |
Sbjct 924892 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATT 924951
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || || | ||||| |||||||||||| | ||||||||||| ||
Sbjct 924952 GACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAACAGCGTCTG 925011
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | ||||||||| |||||||||||||| |||
Sbjct 925012 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCAGACTACAACATCCAGAAG 925071
Query 38433 G 38433
|
Sbjct 925072 G 925072
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500167879550080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |