Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 333 3e-86 seq5 102 1e-16 >seq4 Length=1629322 Score = 333 bits (368), Expect = 3e-86 Identities = 1028/1587 (65%), Gaps = 25/1587 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| | ||| || || || || || || Sbjct 1498332 TCATCCTCCTCCTTGTACTTCTCGGCATCGGAAAGCATACGCTCGATCTCCTCCTTGGAC 1498391 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || ||||| | ||| || || | | |||| || | Sbjct 1498392 AGACGTCCCTTGTCGTTGGTGATGACGATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 1498451 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| ||||| || ||||||| ||||| | || | || || || | Sbjct 1498452 GCAGAGACATTCATGATACCGTTGGCATCAAGGTCGAAGGTAACCTCGATCTGGGGAACA 1498511 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| || ||||| || | || || | || | | |||| ||| | Sbjct 1498512 CCGCGAGGAGCGGGAGGGATACCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 1498571 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || ||||| | || || |||| || || || Sbjct 1498572 GTGCGTTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAG 1498631 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | ||||| || || || | ||||| | | |||| Sbjct 1498632 GTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGGTC 1498691 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC---CAAGAGTAAC 6985 || |||||||| || || | || ||||| || |||| || || || ||| | | Sbjct 1498692 ATCATACCACCAGCGGTCTCAATACCGAGAGAGAGGGGTGCGACATCGAGCAGGAGGATC 1498751 Query 6986 AGGT-------CTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | | | || ||||| | | ||| || || ||||| | Sbjct 1498752 TCGTTGGTGGACTTGGA---AGTAGTG----TCACCAGACAGGATAGCAGCCTGGACGGC 1498804 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || || || || || |||||||||||||| || | || || | || || ||||| || Sbjct 1498805 AGCACCATAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAA 1498864 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || || | | | | || || ||||| || || || |||||||| | |||||| Sbjct 1498865 GTAGTCGGTGATGAGCTTCTGGATACGGGGGATACGGGTGGAACCACCGACGAGAACGAT 1498924 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | || | || |||||||| | ||| || ||||| || | || Sbjct 1498925 CTCGTGGACCTGGCTCTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACGGGCTGGAT 1498984 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 ||||| | |||| || || || || ||||| ||||| || ||||| || || Sbjct 1498985 GGTGGAGCGGAAGAGGTCCTGGCAGAGCTCTTCGAAACGAGCACGAGTGATGGAGGTGTA 1499044 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| |||| || ||| | | || || || ||||||| || || || | ||||| | Sbjct 1499045 GAAGTCAATACCCTCGAAAAGAGAGTCGATCTCAATGGAGGTCTGGGCGGAAGAAGAGAG 1499104 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || ||||| || || || || | ||| || || ||||| | ||| | Sbjct 1499105 GGTACGCTTGGCACGCTCGCAAGCAGTGCGAAGACGGCGCAGAGCACGAGAGTTGGTAGC 1499164 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | ||| ||||| | || || || || || | | ||| || | || | || Sbjct 1499165 CAAATCCTTCTTGTTCTTGCGCTTGAATTCATTAACGAAATGGTTGACCAGACGGTTGTC 1499224 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || ||||| || || | ||||| || || || || | ||||| || ||||||||| | Sbjct 1499225 AAAGTCTTCTCCTCCAAGATGTGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCTTC 1499284 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | | | || ||||| || ||||||||||| || || || ||||| || || Sbjct 1499285 CTCGATGGTGAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGAACATT 1499344 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 ||| | || | ||||| ||||||||||| || || || || || || || || || Sbjct 1499345 GCGCTCGCCCTCAATCTTCTTGTCGAGACCGTAGGCAATGGCAGCGGCAGTAGGCTCGTT 1499404 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| || ||| || || ||||| | || || || || || || || || Sbjct 1499405 GATGATACGGAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGCTG 1499464 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||||| |||||||| ||||| || ||||| |||| |||| | |||||| || Sbjct 1499465 AGAGTCGTTGAAGTAGGCGGGGACGGTAACGACAGCGTTGTTGACGGTGCCACCGAGGTA 1499524 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | || ||| | || ||| ||||| || | |||||| || ||||| || | | || Sbjct 1499525 GGCCTCGGCGGTCTCACGCATCTTGGTGAGGATCATCGAGGAGATCTCCTCGGGAGTGAA 1499584 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC-CGCAGCACCGGGGA 7877 || || || || || || || || || || | | ||| || | | | | | || Sbjct 1499585 TTGCTTGGTCTCTCCCTTGAACTCGACCTCGACGACGGGCTTGCCACCCTTCTC----GA 1499640 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 | | ||| | | | | ||||| ||| | ||||||| || |||||||| | | Sbjct 1499641 TGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCTGAAAACTTGCGGC 1499700 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| |||||||| || || || |||||||| | |||||||||||| ||||||||| | Sbjct 1499701 CGATCAGACGCTTGGCGTCGAAGACTGTGTTGTGGGGGTTCATGGCGACTTGGTTCTTGG 1499760 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | || || ||||||||||| || | || || || || ||| | || ||||| |||| Sbjct 1499761 CGGCATCACCGATAAGACGCTC---GGTGTCTGTGAAGGCCACGAAAGAAGGGGTGGTTC 1499817 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 | || || ||||| || ||||| || || | ||| | | ||| ||| ||||| | Sbjct 1499818 GGTTACCCTGGTCATTGGCAATGATGTCGCATCTGTCCTCGCGGAAGATGCCCACGCAAG 1499877 Query 8118 AATACGTTGTTCCTAAATCAATACCGA 8144 ||||||| || || | || ||||||| Sbjct 1499878 AATACGTGGTACCAAGGTCGATACCGA 1499904 >seq5 Length=1482039 Score = 102 bits (112), Expect = 1e-16 Identities = 204/302 (68%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | ||||| | || || || || || || || ||||| |||| ||| Sbjct 1084442 TCGAAGTCCTGTCCACCGAGATGGGTGTCACCGGCAGTAGCCTTGACGGTGAAGACACCA 1084501 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | | || ||||| || |||||||| || || || | || || ||| Sbjct 1084502 CCCTGGATGTTGAGGAGGGAGACATCGAAAGTACCACCGCCAAGATCGTAGATCAGGACG 1084561 Query 7577 TTCGTATCGTCGTCT---TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | || ||||| | |||||||| |||||||| || || || || Sbjct 1084562 TTACGCTCCTTGTTGGACTTGTTGGAGCCAAGACCGTAGGCGATAGCAGCGGCGGTAGGC 1084621 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| ||||||||||| | | ||||| || || || || Sbjct 1084622 TCGTTGATGATACGGAGGACGTTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGA 1084681 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || | ||| || | | || ||||| ||| Sbjct 1084682 CGCTGGTTGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCG 1084741 Query 7754 AG 7755 || Sbjct 1084742 AG 1084743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126551881080