Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq127 196 6e-45 seq9 107 2e-18 seq7 105 8e-18 >seq127 Length=80722 Score = 196 bits (216), Expect = 6e-45 Identities = 657/1000 (66%), Gaps = 36/1000 (4%) Strand=Plus/Plus Query 112006 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 112065 ||||||| ||||| |||||| | ||| || | ||||| || || | || || || | Sbjct 27479 TCTATCTCGAGCCCTGGCACTCTGATGTCTTCGAGTTTCTGGACCTTCGAAAGAATCACG 27538 Query 112066 GTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 112124 | | || ||| || ||| || || || ||| ||||| ||||| || ||||||||| Sbjct 27539 GAAAGGAAGAGATCCG-TGCACGAGACCTGTTCCTGGCTCTGTGGATCCCTGATCTCTTC 27597 Query 112125 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGT 112184 |||||| | |||||| ||| | || ||| ||||| | || || || || || || Sbjct 27598 ATGAAGCGCGTTGAGAAGAACGAGAACTGGACTCTCATGTGCCCTAACGAGTGCCCTGGC 27657 Query 112185 CTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT 112244 || | || | || ||||||||||| ||||| ||| ||||| || | || || Sbjct 27658 CTGGCTGACTGCTACGGCGAGGAGTTTGAGGCCCTATACGAGAAGTATGAAAAGGAGGGT 27717 Query 112245 CGGG--CGACTG-CGA-CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTC 112299 || | || | | ||| | ||||| | || | ||||| | | || ||| | | | Sbjct 27718 CGTGGTCGTCAGACGATCCGTGCC-----CAGAAGCTGTGGTACTCGATCCTCGAAGCCC 27772 Query 112300 AAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATC 112359 ||||||||||||||| || | ||||||||||| || || || |||| ||||| || | Sbjct 27773 AAACCGAGACTGGTAACCCCTTCATGCTTTACAAGGATGCTTGCAACCGTAAGAGCAACC 27832 Query 112360 AAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG 112419 | ||||| ||||| ||| || ||||| || || || || || | |||| | Sbjct 27833 AGAAGAACCTGGGTACTATCCGCAGCTCCAATCTTTGCACTGAGATTATTGAATACTGCG 27892 Query 112420 ACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATC 112479 |||||| ||||| || ||||| || || | ||||| ||| || || ||| Sbjct 27893 CTCCCGATGAGGTTGCTGTTTGCAACCTGGCTTCGCTGGCTCTGCCCGCCTACGTTGAT- 27951 Query 112480 CAGAGACAAAGAC--ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAA 112537 ||| | | | | | | | || |||||||||||||| | || Sbjct 27952 -TACGACGAGGGCTGCTACAACTTCAAGAAGCTCCACGAAGTTACACGGGTTATCGTGCG 28010 Query 112538 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 112597 ||||| ||| | | || ||| || | ||||||||| || || || || || Sbjct 28011 TAACCTGAACCGTATCATCGATGTCAACTACTACCCCGTTCAGGAGGCACGCAACAGCAA 28070 Query 112598 TATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTT 112656 ||| | || || || |||||||| ||||| || ||||| || |||| |||| | || | Sbjct 28071 CATGCGTCATCGACCCATTGGTCTTGGTGTTCAGGGTCTTGCAGATGCATTCTTGGCTCT 28130 Query 112657 GTCGCCACGCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACA 112715 | || || || ||| || || || || | | ||| || || || |||||| Sbjct 28131 G-CG-CATGCCTTTCGAGTCGCCTGAGGCTCGTCAGCTGAATAAGCAGATCTTCGAGACA 28188 Query 112716 ATGTATCACGCCGCTCTTGAGGCGAGTTC--GGAGTTGGCAGAGGTTGATGGTCCATATG 112773 || || || ||||| ||| |||| | ||| | || ||| | ||||| || Sbjct 28189 ATCTACCATGCCGCCCTT--ACTGAGTCCATGGAACTCGCGAAGGAGCAAGGTCCCTACC 28246 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 | ||||| |||| || ||||||||| | || | ||||| || || |||| |||| || Sbjct 28247 AGACCTTCAAGGGATCCCCAGCTTCAGAGGGAATCCTTCAGTTCGACATGT-GGAATGTC 28305 Query 112834 AGACC----AAGCTTCACTACGACTGG--GACGCTCTCAAGGAACGCATCAAGGAGAAGG 112887 | || | ||| | || ||| |||||| || | || | ||||| ||| | | Sbjct 28306 ACCCCCTCTGACCTT---TGGGAGTGGGAGACGCT-TCGA-GAGCAGATCAAAGAGCACG 28360 Query 112888 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 112947 || | || |||||||| | |||| || ||||| |||||| ||| | || ||||||| Sbjct 28361 GTATCCGCAACAGTCTGCTCGTGGCTCCTATGCCCACAGCCAGTACCTCTCAGATCTTGG 28420 Query 112948 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 | || ||||||||||| || |||||||| | |||||||| Sbjct 28421 GCAACAATGAATGCTTCGAGCCCTACACATCCAACATCTA 28460 >seq9 Length=1081052 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||| |||| | ||| |||||| ||| | |||||||| ||| Sbjct 1020410 GTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTATTTTCTGGTTGAAGAAGCGTGGT 1020351 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 1020350 CTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGTCTTCAC 1020294 >seq7 Length=1388246 Score = 105 bits (116), Expect = 8e-18 Identities = 274/415 (66%), Gaps = 22/415 (5%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| |||||||| || | ||||| | || | || ||| | || || || |||| Sbjct 655997 TCAAAACGACCTGGACGCATCAGCGCCTTGTCCAAGACGTCAGCACGGTTGGTACCGGCC 656056 Query 15948 ATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | || |||| |||| | | ||| ||||||||||| ||||| | || |||||| | Sbjct 656057 AGAACCACAA--CCTGCTCCCGAGTATTGAAACCATCCATTTCTGTGAGAATCTGGTTGA 656114 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT------TC 16059 || ||| |||||||| || || | ||||| | |||| || | || Sbjct 656115 GTGTAGCTTCTCGTTCATCGTTGCCTCCGAAACCACGACCACTCTCCTGTCTCGCGCGTC 656174 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | | |||||| || || |||||||||| ||||| || || | | | | | | Sbjct 656175 CAATGGCATCGATTTCGTCAATGAAGATAATGCAAGGAGCGTTCTTCCTTCCCTCCGCGA 656234 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 |||| || |||||||| | || |||||||||||||| || ||||| | | | Sbjct 656235 AGAGGTCTCGTACACGAGATGGACCGACACCAACAAACATTTCTACAAATT------CAG 656288 Query 16180 AAC-ATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 ||| | || || |||||| || || || || ||| | || ||| ||||||| Sbjct 656289 AACCACTGACGCTGAAGAAGGGCACGCCTGACTCTCCTGCAGTAGCCTTGGCAAGAAGAG 656348 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||| || || || || || |||| |||||| || ||||||||||| || Sbjct 656349 TCTTACCGGTTCCAGGAGGCCCGGCCAGGATGGCACCACGAGGAATCTTGGCACC 656403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620736293446640