Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq127 187 3e-42 seq9 89.7 6e-13 >seq127 Length=80722 Score = 187 bits (206), Expect = 3e-42 Identities = 1127/1779 (63%), Gaps = 49/1779 (3%) Strand=Plus/Minus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||||||||| ||| ||| |||| || || ||||||||||| || |||||||||| Sbjct 28837 TGAACTGAATAGGGGCCGCAGCAGCCTGAGTACGAAGATAGTACATGCCAGTCTTGAGTC 28778 Query 105618 CTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 105676 | |||||| || || | |||||| | | |||| ||| | ||| | ||| Sbjct 28777 CCAATTTCCA-GCCAGCAAAGTGCATACTGGTAATCTTGCCCATTGAGGGATCCTTCATA 28719 Query 105677 AAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATG 105736 | || | | |||| ||||||||||| ||| || | || ||||| | | Sbjct 28718 TGGATGTTGAGAGATTGAGATTGGTCAATGAAAGCACCTCGATCGGCGGCCATCTGCACA 28659 Query 105737 ACATCCTTCATCTTGA----TTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792 || || | |||| | ||||| || || |||||| ||||| ||||| || Sbjct 28658 AC----TTGACGTTGAGAAATCTCCCAGACGGTCTTGTAGAGGGCCTTGAGGTCATCAGG 28603 Query 105793 GATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 ||| | | ||| ||||| || ||||| | | || | | |||||| | | Sbjct 28602 GATGTTGGGGATGTTTTGGATCGAACCTTGTTCAGCAATAATTCGGTTCTTCATGGCATC 28543 Query 105853 GGACCA-AAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACT 105911 |||||| ||| |||| || ||||| || | ||| |||||| | | |||| Sbjct 28542 GGACCACAAGCCCAA-CTCAACAAGATCTTTTAAGAGCCAGGGGTTGACGACCTGGAACT 28484 Query 105912 CTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTAT 105971 |||| || || | || |||||||| | |||||||| || ||||||||||| | Sbjct 28483 CTCCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGGGCTCGAAGCATTCATTGT 28424 Query 105972 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 106031 | |||||||| || | ||| |||||| ||||| || |||| | |||||||| || | Sbjct 28423 TGCCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCACGAGCAGACTGTTGCGGA 28364 Query 106032 GACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTC 106089 ||| | || ||||| | || || ||||| | | || | || || | Sbjct 28363 TACCGTGCTCTTTGATCTGCTCTCGAAGCGTCTCCCACTCCCAAAGGTCAG-AGGGGGTG 28305 Query 106090 ACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTC 106149 || || |||||| || || ||||| | || | || | || || |||| || |||| Sbjct 28304 ACATT-CCACATGTCGAACTGAAGGATTCCCTCTGAAGCTGGGGATCCCTTGAAGGTCTG 28246 Query 106150 ATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC---CAGGGATGCGTGATACAT 106206 |||| |||||| | | || | ||| || | | ||| |||| || || || || Sbjct 28245 GTAGGGACCTTGCTCCTTCGCGAGTTC-CA--TGGACTCAGTAAGGGCGGCATGGTAGAT 28189 Query 106207 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGC 106265 || || ||||| | ||||| || || ||| || || ||| || | || || Sbjct 28188 TGTCTCGAAGATCTGCTTATTCAGCTGACGAGCCTCAGGCGACTCGAAAGGCAT-GC-GC 28131 Query 106266 ACA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 106324 | | | ||| |||| || ||||| |||||||| | |||||| |||| || ||||| Sbjct 28130 AGAGCCAAGAATGCATCTGCAAGACCCTGAACACCAAGACCAATGGGTCGATGACGCATG 28071 Query 106325 TTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 106384 || || || || || |||||| || | || || |||| ||||| || || Sbjct 28070 TTGCTGTTGCGTGCCTCCTGAACGGGGTAGTAGTTGACATCGATGATACGGTTCAGGTTA 28011 Query 106385 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA 106444 | || | ||| | ||| || || || | | | | || || | | Sbjct 28010 CGCACGATAACCCGTGTAACTTCGTGGAGCTTCTTGAAGTTGTAGCAGCCCTCGTCGTAA 27951 Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 | || || || || || | || |||| ||||||||||| |||||| | | Sbjct 27950 TCAACGTAGGCGGGCAGAGCCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCG 27891 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 ||| || | ||| || || || | ||||| || || || |||| ||||| ||| Sbjct 27890 CAGTATTCAATAATCTCAGTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGG 27831 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||||| ||||||||||| |||||| |||| | || ||||| || || Sbjct 27830 TTGCTCTTACGGTTGCAAGCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGG 27771 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGG----CGGCTGGTACAATGGCGTTGGCCCGTC 106679 | | ||| || | | ||||| | || | ||| | || || || | || | Sbjct 27770 GCTTCGAGGATCGAGTACCACAGCTTCTGGGCACGGATCGT---CTGACG--ACCACGAC 27716 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 ||||| || ||||| ||| ||||| ||||||||||| || ||| | || | Sbjct 27715 CCTCCTTTTCATACTTCTCGTATAGGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGC 27656 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || || || || || | |||| ||| | | || |||||| |||||||||| Sbjct 27655 CAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGA 27596 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCT 106858 | || || || |||||||| | || || |||| | ||| || |||||| | || Sbjct 27595 AGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGA-TCTCTTCCTTTCCG 27537 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 || || ||| | || || ||||| | || ||| | |||||| ||||| ||||||| Sbjct 27536 TGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 27477 Query 106919 GCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | | || | | | | ||| | |||| ||||| | || ||| ||| || Sbjct 27476 GCAAAGGCACCGGGGCGCTTGTTG-CCACCCTGATCAACATATCTGGCAGTGTTGTTGAA 27418 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGAT 107032 || || ||||| || || || |||| ||| || || || || || |||||| Sbjct 27417 CACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCC 27358 Query 107033 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 107092 | | || | | || | || | || ||||| || ||| ||||||||| Sbjct 27357 T--GTAGCACGAATGCGGTGAACGTTGAGACCGATACCTCCTGCCATCTTTGAGATCATG 27300 Query 107093 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 107152 ||||| | | ||||| | |||||||||| || ||| ||||| | ||| |||| Sbjct 27299 GCACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGG 27240 Query 107153 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 ||||| || | ||| | || ||||| |||||||| || || || | || ||| Sbjct 27239 AAGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGA 27180 Query 107213 ATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 107271 | || | || | | |||||| | || ||| ||||| | |||| ||||||| || || Sbjct 27179 GTAAAGA-ACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACC 27121 Query 107272 GTGGATGCCGATGGCCACACGCATAAACATGTATTgggg 107310 || || | | |||||||| | ||||| ||| || Sbjct 27120 CCAAATACCCACAGAAACACGCATGATCATGTGTTGTGG 27082 >seq9 Length=1081052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || ||||| || || || || |||||| || || ||||| ||||| Sbjct 1020294 GTGAAGACCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAGACC 1020353 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| |||||| ||| | || ||||||||| ||||| || Sbjct 1020354 ACGCTTCTTCAACCAGAAAATAGAAGCGAAAGCACCACTGAAGAAGATGCCCTCGACGGC 1020413 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA 117431 || || |||| ||| |||| ||||| Sbjct 1020414 GGCGAAGGCAACAAGACGCTGAGCGAA 1020440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589974996063880