Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq87 89.7 3e-13 seq4 82.4 5e-11 >seq6 Length=1479970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| ||| || ||||||||||| ||||| |||||| | || | || || Sbjct 795408 AACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGGCCGTCTTC 795467 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || || || |||||||| | || | |||||||| || Sbjct 795468 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTG 795527 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | |||| || | ||| || || | || || || || Sbjct 795528 GATCTTCGACTTCACATTGTCAATCGTGTCCGATGACTCGACTTCCAGTGTGATAGTCTT 795587 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| ||||| || || ||||||||| Sbjct 795588 TCCGGTGAGGGTCTTGACGAAAATCTGCATA 795618 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| || Sbjct 795637 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 795696 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || || ||||| | || | ||||||||||| | Sbjct 795697 AGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGA 795756 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | ||| | || || |||| ||| ||||| || Sbjct 795757 ATCTTCGACTTAACGTTGTCGATGGTGTCAGAAGATTCGACCTCGAGGGTGATGGTCTTG 795816 Query 34953 CCCGTGAGAGTCTTCAC 34969 || ||||| ||||| || Sbjct 795817 CCGGTGAGGGTCTTGAC 795833 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || ||||| || || || || Sbjct 795941 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAA 796000 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||||| ||||| || Sbjct 796001 ATCAGGCGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTCGACTTGAC--AT 796058 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||| || || | || ||||| || || ||||| ||||| Sbjct 796059 --TGTCGATGGTATCAGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTT 796116 Query 34967 CACAAAGATCTGCAT 34981 || || |||||||| Sbjct 796117 GACGAAAATCTGCAT 796131 >seq87 Length=157873 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || || ||||| || ||||| || Sbjct 70615 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 70556 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 70555 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 70496 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| || || || |||||||| ||||| || Sbjct 70495 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTGAGGGTCTTGACG 70436 Query 34971 AAGATCTGCATATT 34984 || |||||||| || Sbjct 70435 AAAATCTGCATCTT 70422 >seq4 Length=1629322 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 925070 TTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 925011 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || || ||||| | || | ||||||||||| |||||| ||||| | Sbjct 925010 AGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 924951 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || || ||| || || | ||| ||||| || ||||| || |||||||| ||| Sbjct 924950 ATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 924891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630486256536