Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq127 120 3e-22 >seq127 Length=80722 Score = 120 bits (132), Expect = 3e-22 Identities = 416/646 (64%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| || || ||||| ||||| | | ||| | ||| | || | || | |||| Sbjct 27656 CCAGGGCACTCGTTAGGGCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATG 27597 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | ||| || ||||| ||||| | || | || | | | | ||||| || || Sbjct 27596 AAGAGATCAGGGATCCACAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCG 27537 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| || ||| || ||||| || | | ||||| ||||| || || | ||| || Sbjct 27536 TGATTCTTTCGAAGGTCCAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATA 27477 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| || || || || || || ||||| | |||||||||||| ||||| | Sbjct 27476 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGATCAACATATCTGGCAGTGTTGTTGAAC 27417 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 |||| | ||| |||| || ||||| ||| | || ||||| || | ||| || || Sbjct 27416 ACTCGCAGCATGGGGATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCT 27357 Query 48456 CTAGCTCTTATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 |||| | || || ||| | ||| ||||| |||||||| || || || | | Sbjct 27356 GTAGCACGAATGCGGTGAACGTTG--AGACCGATACCTCCTGCCATCTTTGAGATCATGG 27299 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 |||| || || ||||| || || || || || || ||||| |||||| | || | Sbjct 27298 CACAGGTCTTGAGAGTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGA 27239 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 | || || | || | || || || | ||| |||| || ||||| |||||| Sbjct 27238 AGCATGATGAGAGCTGAGCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAG 27179 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTA---TATCCCATT 48690 |||| | || | || | | || || || || || ||| || | |||| | Sbjct 27178 TAAAGAACTTGTTGGACATGTAGTTGTAGGTCTCGATGACACGTTCAATGTTATCACCCC 27119 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 | ||||| | ||| |||||||| | ||| | ||| || | |||||||| ||| | Sbjct 27118 AA---ATACCCACAGAAACACGCATGATCATGTGTTGTGGGCGCTCAACAATCTTGCCGT 27062 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || | ||||| || |||| ||| || ||||| || || Sbjct 27061 TGAGCTTGAGGAGATAGGAACGCTCCAGTGTCTTGAAACCGAAGTA 27016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103270254680