Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq142 107 2e-18 >seq142 Length=63576 Score = 107 bits (118), Expect = 2e-18 Identities = 256/385 (66%), Gaps = 18/385 (5%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || ||||| | || ||| ||||||||||| || ||| ||| | Sbjct 35762 TGTGGCAGGGGGGCAGCACCATGTTGGGCATGTCCTTGGGGTTCCACGCCGACAGGATCA 35703 Query 30068 TGCGCCTGTCTTCTGGGTT-GTTC----CT----GATGAGGTCCACGGCGTTTTGCAGCT 30118 | || | ||| | ||||| || | || |||||| || |||| |||| Sbjct 35702 TCCGGCGGTCGTAAGGGTTCGTGCGGAGCTTGTGGATGAGCTC---GGCG------AGCT 35652 Query 30119 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30178 | || || ||| || | |||||| | | | ||| |||||| || || || |||| Sbjct 35651 GGTCGACGCCCTGGCCGGTGTAGTCGGTCTTGGAGTCGACGTACTCGGCCCCAAAGTGCC 35592 Query 30179 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30238 ||||||||||||||| || || |||||||| ||| | || | || | ||| || Sbjct 35591 GCCACTGGAACCCGTAGACGGGGCCCAGGTCGCCCACCTCGCGATGGGTCAGGCCGAGCT 35532 Query 30239 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30298 |||| | || || | || |||||| ||||||||||||| || |||| |||| |||| Sbjct 35531 TGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGCG 35472 Query 30299 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30358 | || |||| || || |||||| || ||||| | || ||| | Sbjct 35471 CGAGCGACGATGTGTTGCCCTGGATGAACCAGAGGAGCTCGAGGATGATGGCGCGGTGGA 35412 Query 30359 AGACCCTCTTGGTCGTGAGGAGGGG 30383 |||| | || |||||||||||||| Sbjct 35411 AGACTCGTTTCGTCGTGAGGAGGGG 35387 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826 || || || | ||| || | ||| ||||| | | |||| || ||||| ||||||||| Sbjct 36066 GGGAACGGCCGGGGTTCTCGCTCCAGCTGCTCCCTGAGCGCGTCGACGTGGTCCAGGTAG 36007 Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAA-ACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 ||||| ||||| |||| | |||| | ||| ||||| | | || |||||| || Sbjct 36006 ACGTGCGCGTCGCCCATGACGTGGGTGAGACTG-CCCGGCACCATGTCGCAGACGTGTGC 35948 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| ||| || || | ||||||||||||||| || || || || || ||||| || Sbjct 35947 GAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGGACGCCCAGGCCCATATC 35888 Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969 | |||| |||||| ||||| || Sbjct 35887 GCAGGACCGCTGGTACAGCTGGCA 35864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613680718751