Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clonostachys_20rosea_20[genbank_20GCA_5F001640285.1_202016-05-09] 787 sequences; 55,184,262 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq127 196 9e-45 seq9 120 6e-22 >seq127 Length=80722 Score = 196 bits (216), Expect = 9e-45 Identities = 701/1071 (65%), Gaps = 45/1071 (4%) Strand=Plus/Minus Query 221411 GACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GC 221469 |||| || ||||| || |||||||| ||||| |||||| ||| || || || | || Sbjct 28214 GACTCAGTAAGGGCGGCATGGTAGATTGTCTCGAAGATCTGCTTATTCAG-CTGACGAGC 28156 Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 ||| || || ||| ||||| ||||| | || | || || || ||||| || || Sbjct 28155 CTCAGGCGACTCGAAAGGCATGCGCAGAGCCAAGAATGCATCTGCAAGACCCTGAACACC 28096 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAG 221587 | ||| ||||| | || | | ||||| | ||| | || ||| ||||| || || Sbjct 28095 AAGACCAATGGGTCGATGACGCATGTTGCTGTTGCGTGC-CTCCTGA-ACGGGGTAGTAG 28038 Query 221588 TTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGAC---TTTAACCACCTCGGTCAGC 221644 ||||| ||||| | | ||| ||||| | ||| || | |||| | | | ||| Sbjct 28037 TTGACATCGATGATACGGTTCAGGTTACGCACGATAACCCGTGTAACTTCGTGG---AGC 27981 Query 221645 TTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGG 221704 |||| | ||| | || ||| |||||| || || | ||| || Sbjct 27980 TTCTTGAAGTTGTAG--CA----GCCCTCGTCGTAA------TCAACGTAGGCGGGCAGA 27933 Query 221705 GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCT 221764 || | |||||||| || || || ||||| || | || | || ||||| Sbjct 27932 GCCAGCGAAGCCAGGTTGCAAACAGCAACCTCATCGGGAGCGCAGTATTCAATAATCTCA 27873 Query 221765 GTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCA 221824 || || || ||| || ||| || ||||||| || || || ||| || ||| | Sbjct 27872 GTGCAAAGATTGGAGCTGCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTACGGTTGCAA 27813 Query 221825 GCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCC 221884 || |||||||| ||||| ||||| |||||||| || || | || ||| || | Sbjct 27812 GCATCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTTTGGGCTTCGAGGATCGAGTAC 27753 Query 221885 CAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATAC--CC 221940 || || | ||||| | | | |||| | ||| | |||||| |||||||||| | Sbjct 27752 CACAGCT-TCTGGGCACGGATCGTC-TGACGACCACGACCCTC---CTTTTCATACTTCT 27698 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 |||||| || | |||||| || ||||| || ||||||| || ||| | || Sbjct 27697 CGTATAGGGCCT--CAAACTCCTCGCCGTAGCAGTCAGCCAGGCCAGGGCACTCGTTAGG 27640 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||| ||| |||||| || ||| | | || | || ||||||||| || |||||||| Sbjct 27639 GCACATGAGAGTCCAGTTCTCGTTCTTCTCAACGCGCTTCATGAAGAGATCAGGGATCCA 27580 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 ||| ||| | || || |||| | || ||| ||| |||| || || | || || Sbjct 27579 CAGAGCCAGGAACAGGTCTCGTGCACGGATCTCTTCCTTTCCGTGATTCTTTCGAAGGTC 27520 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 || |||||| || | |||| |||||| ||||| ||||||| || | || ||||| || Sbjct 27519 CAGAAACTCGAAGACATCAGAGTGCCAGGGCTCGAGATAGATAGCAAAGGCACCGGGGCG 27460 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 ||||||||||||||||| || ||| ||| ||| | |||||| | || || | || Sbjct 27459 CTTGTTGCCACCCTGAT-CAACAT-ATCTGGCAGTGTTGTTGAACACTCGCAGCATGGGG 27402 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGG 222295 | | ||| |||||| |||||||| || |||||||| || || | | || Sbjct 27401 ATGATTCCATTGGATGTGCCGTTGGTACCGGCAATGTACGAGCCTGTAGCACGAATGCGG 27342 Query 222296 TTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGA 222355 | | | || | |||||||| || || || ||||||||||| ||| |||||||| Sbjct 27341 TGA-ACGTTGAGA--CCGATACCTCCTGCCATCTTTGAGATCATGGCACAGGTCTTGAGA 27285 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 || || ||| || || || ||| ||||| | | | || || || || || | | Sbjct 27284 GTATCGTAGATACCGTCAATGCTGTCATCCTTCATATCGACAAGGAAGCATGATGAGAGC 27225 Query 222416 TGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAG 222466 |||| | || || || ||| || || || |||||| || || |||||| Sbjct 27224 TGAGCCTGGGGGGTACCGGCATTGAATAGAGTGGGAGAAGCATGAGTAAAG 27174 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| ||||| | || || | | ||| | ||| || ||| | || Sbjct 28500 GTTGACGACCTGGAACTCTCCAGCCAGAACACGTCGGGAGTAGATGTTGGATGTGTAGGG 28441 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || || |||||||||| |||||||| || ||||| |||||||| || ||||| Sbjct 28440 CTCGAAGCATTCATTGTTGCCCAAGATCTGAGAGGTACTGGCTGTGGGCATAGGAGCCAC 28381 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 28380 GAGCAGACTGTTGCG 28366 >seq9 Length=1081052 Score = 120 bits (132), Expect = 6e-22 Identities = 292/448 (65%), Gaps = 9/448 (2%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || ||||| || || || ||||||||||| ||||| ||| | || || | | Sbjct 1020433 AGCGTCTTGTTGCCTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGTGCTTTCGCTTCTA 1020374 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||| | ||| || || ||||| || || ||| ||||||||||| ||| Sbjct 1020373 TTTTCTGGTTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCT 1020314 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | ||||||||||| |||| || || || ||||| ||| || | ||| || Sbjct 1020313 CCCGTGACGAGGGTCTTCACACTGACTTCGCTTGCCTACTCCACTC---CCATCTGA--- 1020260 Query 26057 ACAAACCTTCT--CAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 |||| | | |||| || | | | || ||||||| || || || || |||| Sbjct 1020259 ACAACCGCGCAAGCAAGGAGGTCATTGAGAGCATCATCACTGACGCCGTCACCATTGAGA 1020200 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| ||||||||||| || || |||| Sbjct 1020199 AGGAGTTCTTGACTGAGGCCCTTCCTTGCGCCATGCTGGGCATGAACGCCAACCTGATGA 1020140 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCT 26233 || ||||| |||| ||| ||||||| ||| ||| | || || || || | | Sbjct 1020139 AGCAGTACATCGAGTTTGTTGCCGACCGTCTTCTGGTCGCTCTCGGCAACGACAAGGTGT 1020080 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| || | ||||| |||||||| ||||| ||||| || | | ||| || ||||||| Sbjct 1020079 ACAAGTCGACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGAGGCAAAACCAACT 1020020 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || ||| | ||||| ||||| || Sbjct 1020019 TCTTCGAGAAGCGCGTCGGTGACTACCA 1019992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928835662489280